RNA–Protein interactions for RNA: ENST00000454468.5

SMPD4-213, Transcript of sphingomyelin phosphodiesterase 4, humanhuman

TSL 1 (best)

Gene SMPD4, Length 3,586 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SMPD4-213ENST00000454468 VMACQ2NL98 169 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 GALNT18Q6P9A2 607 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 C17orf64Q86WR6 236 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 RNF130Q86XS8 419 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 PGBD3Q8N328 593 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 TRAM1L1Q8N609 369 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 OR5K1Q8NHB7 308 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 SAMD11Q96NU1 681 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 LRRC3BQ96PB8 259 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 F2RL3Q96RI0 385 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 CD320Q9NPF0 282 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 STOML2Q9UJZ1 356 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 TBC1D3DA0A087WVF3 549 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 TBC1D3IA0A087WXS9 549 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 TBC1D3EA0A087X179 549 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 TBC1D3KA0A087X1G2 549 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 TRBV5-4A0A0C4DH59 114 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 TBC1D3FA6NER0 549 aaPredicted RBP11.54□□□□□ -0.56
SMPD4-213ENST00000454468 TBC1D3LB9A6J9 549 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 EFCAB14O75071 495 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 SLC35G4P0C7Q5 338 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 TBC1D3HP0C7X1 549 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 CDK9P50750 372 aaKnown RBP11.54□□□□□ -0.56
SMPD4-213ENST00000454468 VLDLRP98155 873 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 GPM6BQ13491 265 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 TBC1D3GQ6DHY5 549 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 TBC1D3CQ6IPX1 549 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 C8orf82Q6P1X6 216 aaPredicted RBP11.54□□□□□ -0.56
SMPD4-213ENST00000454468 DEF8Q6ZN54 512 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 CEP68Q76N32 757 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 TRIM46Q7Z4K8 759 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 AMZ2Q86W34 360 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 TBC1D3Q8IZP1 549 aaPredicted RBP11.54□□□□□ -0.56
SMPD4-213ENST00000454468 KXD1Q9BQD3 176 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 NTN4Q9HB63 628 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 SLC52A3Q9NQ40 469 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 CHD7Q9P2D1 2997 aa11.54□□□□□ -0.56
SMPD4-213ENST00000454468 PNMA8CA0A1B0GUJ8 204 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 LINC00854A0A1B0GVQ3 168 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 RFXAPO00287 272 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 NME6O75414 186 aaPredicted RBP11.53□□□□□ -0.56
SMPD4-213ENST00000454468 INMTO95050 263 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 OLFM2O95897 454 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 NPPAP01160 153 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 ALPLP05186 524 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 CDKN3Q16667 212 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 CYP2A13Q16696 494 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 ZNF852Q6ZMS4 543 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 OLIG3Q7RTU3 272 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 COMMD6Q7Z4G1 85 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 CELF5Q8N6W0 485 aaKnown RBP11.53□□□□□ -0.56
SMPD4-213ENST00000454468 SPPL3Q8TCT6 385 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 SMAD5Q99717 465 aaKnown RBP11.53□□□□□ -0.56
SMPD4-213ENST00000454468 CPEB1Q9BZB8 566 aaKnown RBP11.53□□□□□ -0.56
SMPD4-213ENST00000454468 RHBGQ9H310 441 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 RDH14Q9HBH5 336 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 THUMPD1Q9NXG2 353 aaKnown RBP11.53□□□□□ -0.56
SMPD4-213ENST00000454468 HSFX1Q9UBD0 423 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 TMA7Q9Y2S6 64 aaKnown RBP11.53□□□□□ -0.56
SMPD4-213ENST00000454468 PATJQ8NI35 1801 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 HEPACAM2A8MVW5 462 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 TNFRSF11BO00300 401 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 C8orf89P0DMQ9 161 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 ZNF24P17028 368 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 EPHA2P29317 976 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 MAPK12P53778 367 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 C6orf141Q5SZD1 244 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 LILRA6Q6PI73 481 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 PTRH1Q86Y79 214 aaKnown RBP11.53□□□□□ -0.56
SMPD4-213ENST00000454468 HIPK1Q86Z02 1210 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 NPAS3Q8IXF0 933 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 MFSD2AQ8NA29 543 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 PLA2G15Q8NCC3 412 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 C11orf65Q8NCR3 313 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 PPP1R16AQ96I34 528 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 C12orf66Q96MD2 445 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 RHNO1Q9BSD3 238 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 NPLQ9BXD5 320 aaPredicted RBP11.53□□□□□ -0.56
SMPD4-213ENST00000454468 SLC2A11Q9BYW1 496 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 TBC1D23Q9NUY8 699 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 DCAF13Q9NV06 445 aaKnown RBP11.53□□□□□ -0.56
SMPD4-213ENST00000454468 ERVK-18Q9QC07 812 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 A0A1W2PP55 124 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 TMEM247A6NEH6 219 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 SGTAO43765 313 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 CCNDBP1O95273 360 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 IL3P08700 152 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 CSNK1DP48730 415 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 C21orf59P57076 290 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 ZNF234Q14588 700 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 ZNF551Q7Z340 670 aaPredicted RBP11.53□□□□□ -0.56
SMPD4-213ENST00000454468 PIWIL3Q7Z3Z3 882 aaKnown RBP11.53□□□□□ -0.56
SMPD4-213ENST00000454468 HDDC3Q8N4P3 179 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 VN1R2Q8NFZ6 395 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 STON2Q8WXE9 905 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 USP7Q93009 1102 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 OR4K3Q96R72 315 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 LHPPQ9H008 270 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 DUSP12Q9UNI6 340 aa11.53□□□□□ -0.56
SMPD4-213ENST00000454468 SH2B3Q9UQQ2 575 aa11.53□□□□□ -0.56
Retrieved 100 of 20,778 RNA–protein pairs in 25.1 ms