RNA–Protein interactions for RNA: ENST00000448833.5

VPS41-208, Transcript of VPS41, HOPS complex subunit, humanhuman

TSL 1 (best)

Gene VPS41, Length 711 nt, Biotype nonsense mediated decay, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS41-208ENST00000448833 HAT1O14929 419 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 HNRNPRO43390 633 aaKnown RBP6.69□□□□□ -1.34
VPS41-208ENST00000448833 MED26O95402 600 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 NPPBP16860 134 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 TCP1P17987 556 aaKnown RBP6.69□□□□□ -1.34
VPS41-208ENST00000448833 JAK1P23458 1154 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 DCTP40126 519 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 XCR1P46094 333 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 CCR8P51685 355 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 TERF1P54274 439 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 TBPL1P62380 186 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 YBX1P67809 324 aaKnown RBP6.69□□□□□ -1.34
VPS41-208ENST00000448833 MPP1Q00013 466 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 EEF1A2Q05639 463 aaKnown RBP6.69□□□□□ -1.34
VPS41-208ENST00000448833 ZNF33BQ06732 778 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 RGS1Q08116 209 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 ART3Q13508 389 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 CSHL1Q14406 222 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 PCOLCEQ15113 449 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 ZRSR2Q15696 482 aaKnown RBP6.69□□□□□ -1.34
VPS41-208ENST00000448833 NSDHLQ15738 373 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 BTBD16Q32M84 506 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 ANKRD22Q5VYY1 191 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 ZNF324BQ6AW86 544 aaPredicted RBP6.69□□□□□ -1.34
VPS41-208ENST00000448833 FAAH2Q6GMR7 532 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 TMEM214Q6NUQ4 689 aaKnown RBP6.69□□□□□ -1.34
VPS41-208ENST00000448833 H3F3CQ6NXT2 135 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 TTC27Q6P3X3 843 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 ZNF549Q6P9A3 640 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 AGTRAPQ6RW13 159 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 LCTLQ6UWM7 567 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 GFRALQ6UXV0 394 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 ABHD13Q7L211 337 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 ASPGQ86U10 573 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 ZC3H7AQ8IWR0 971 aaKnown RBP6.69□□□□□ -1.34
VPS41-208ENST00000448833 LRRC56Q8IYG6 542 aaPredicted RBP6.69□□□□□ -1.34
VPS41-208ENST00000448833 LGI4Q8N135 537 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 ARHGEF39Q8N4T4 335 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 SLC5A8Q8N695 610 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 SIRT6Q8N6T7 355 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 PPFIBP2Q8ND30 876 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 PLPP5Q8NEB5 264 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 CATSPER1Q8NEC5 780 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 C7orf57Q8NEG2 295 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 TRPV3Q8NET8 790 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 ABHD11Q8NFV4 315 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 OR4K1Q8NGD4 311 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 OR9A4Q8NGU2 314 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 EEF1AKMT1Q8WVE0 214 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 SLCO2A1Q92959 643 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 TM4SF19Q96DZ7 209 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 MOCOSQ96EN8 888 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 PDLIM5Q96HC4 596 aaKnown RBP6.69□□□□□ -1.34
VPS41-208ENST00000448833 LPAR4Q99677 370 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 UTP23Q9BRU9 249 aaKnown RBP6.69□□□□□ -1.34
VPS41-208ENST00000448833 SARGQ9BW04 601 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 SGPP1Q9BX95 441 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 VN1R1Q9GZP7 353 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 KCNK13Q9HB14 408 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 CHST11Q9NPF2 352 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 PPANQ9NQ55 473 aaKnown RBP6.69□□□□□ -1.34
VPS41-208ENST00000448833 IARS2Q9NSE4 1012 aaKnown RBP6.69□□□□□ -1.34
VPS41-208ENST00000448833 ARL15Q9NXU5 204 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 STOX2Q9P2F5 926 aaPredicted RBP6.69□□□□□ -1.34
VPS41-208ENST00000448833 COPG2Q9UBF2 871 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 SEC14L3Q9UDX4 400 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 ASIC3Q9UHC3 531 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 ENTPD4Q9Y227 616 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 VWA7Q9Y334 891 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 NEU2Q9Y3R4 380 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 CSAG2Q9Y5P2 127 aa6.69□□□□□ -1.34
VPS41-208ENST00000448833 TRBC2A0A5B9 178 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 KRT87PA6NCN2 255 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 A8MUI8 341 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 MAGEB17A8MXT2 336 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 E2F3O00716 465 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 DNALI1O14645 258 aaPredicted RBP6.68□□□□□ -1.34
VPS41-208ENST00000448833 TTI1O43156 1089 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 NRP2O60462 931 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 H2AFYO75367 372 aaKnown RBP6.68□□□□□ -1.34
VPS41-208ENST00000448833 CLDN1O95832 211 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 WDPCPO95876 746 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 AHSGP02765 367 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 ITGAMP11215 1152 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 EEF1DP29692 281 aaKnown RBP6.68□□□□□ -1.34
VPS41-208ENST00000448833 AHRP35869 848 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 HNMTP50135 292 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 CSNK1G2P78368 415 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 CCZ1BP86790 482 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 CCZ1P86791 482 aaPredicted RBP6.68□□□□□ -1.34
VPS41-208ENST00000448833 NAE1Q13564 534 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 CRYMQ14894 314 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 MORF4L2Q15014 288 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 BBS9Q3SYG4 887 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 ACER2Q5QJU3 275 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 RNASEH2BQ5TBB1 312 aaKnown RBP6.68□□□□□ -1.34
VPS41-208ENST00000448833 FAM45BPQ6NSW5 357 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 HIBCHQ6NVY1 386 aaPredicted RBP6.68□□□□□ -1.34
VPS41-208ENST00000448833 XKRXQ6PP77 449 aa6.68□□□□□ -1.34
VPS41-208ENST00000448833 PAQR3Q6TCH7 311 aa6.68□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 29.9 ms