RNA–Protein interactions for RNA: ENST00000448038.2

SYNE1-213, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 6,001 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-213ENST00000448038 ATP6V1C2Q8NEY4 427 aa7.15□□□□□ -1.26
SYNE1-213ENST00000448038 TSPAN14Q8NG11 270 aa7.15□□□□□ -1.26
SYNE1-213ENST00000448038 MYDGFQ969H8 173 aa7.15□□□□□ -1.26
SYNE1-213ENST00000448038 C5orf34Q96MH7 638 aa7.15□□□□□ -1.26
SYNE1-213ENST00000448038 MEAF6Q9HAF1 191 aa7.15□□□□□ -1.26
SYNE1-213ENST00000448038 PNPLA3Q9NST1 481 aa7.15□□□□□ -1.26
SYNE1-213ENST00000448038 LYARQ9NX58 379 aaKnown RBP7.15□□□□□ -1.26
SYNE1-213ENST00000448038 ERVK-11Q9UQG0 969 aa7.15□□□□□ -1.26
SYNE1-213ENST00000448038 MROH6A6NGR9 719 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 CCT3P49368 545 aaKnown RBP7.15□□□□□ -1.27
SYNE1-213ENST00000448038 GSK3BP49841 420 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 BLVRAP53004 296 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 MAPK10P53779 464 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 ID2Q02363 134 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 PCBP2Q15366 365 aaKnown RBP eCLIP7.15□□□□□ -1.27
SYNE1-213ENST00000448038 BROXQ5VW32 411 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 CEACAM20Q6UY09 585 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 FAM98AQ8NCA5 519 aaKnown RBP7.15□□□□□ -1.27
SYNE1-213ENST00000448038 FBXL8Q96CD0 374 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 ASB9Q96DX5 294 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 MMABQ96EY8 250 aaPredicted RBP7.15□□□□□ -1.27
SYNE1-213ENST00000448038 TMEM74Q96NL1 305 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 DHRS4Q9BTZ2 278 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 PDE7BQ9NP56 450 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 PRDM8Q9NQV8 689 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 PPIEQ9UNP9 301 aaKnown RBP7.15□□□□□ -1.27
SYNE1-213ENST00000448038 AQP12BA6NM10 295 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 ENO4A6NNW6 628 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 MAN1A2O60476 641 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 UGT2B11O75310 529 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 IFNGP01579 166 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 NELFEP18615 380 aaKnown RBP7.15□□□□□ -1.27
SYNE1-213ENST00000448038 CD9P21926 228 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 TIA1P31483 386 aaKnown RBP eCLIP7.15□□□□□ -1.27
SYNE1-213ENST00000448038 GPR68Q15743 365 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 SLC5A9Q2M3M2 681 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 EIPR1Q53HC9 387 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 ZNF761Q86XN6 746 aaPredicted RBP7.15□□□□□ -1.27
SYNE1-213ENST00000448038 AQP12AQ8IXF9 295 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 METTL27Q8N6F8 245 aaPredicted RBP7.15□□□□□ -1.27
SYNE1-213ENST00000448038 FAM47BQ8NA70 645 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 HUS1BQ8NHY5 278 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 ARRDC3Q96B67 414 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 ELSPBP1Q96BH3 223 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 F2RL3Q96RI0 385 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 CTPS2Q9NRF8 586 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 NCDNQ9UBB6 729 aa7.15□□□□□ -1.27
SYNE1-213ENST00000448038 OR52A4PA6NMU1 304 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 ARPC2O15144 300 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 HOXC11O43248 304 aaPredicted RBP7.14□□□□□ -1.27
SYNE1-213ENST00000448038 AGR2O95994 175 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 IGLV3-27P01718 113 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 BCHEP06276 602 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 CD6P30203 668 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 CTHP32929 405 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 KCNC1P48547 511 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 TYSND1Q2T9J0 566 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 TMEM214Q6NUQ4 689 aaKnown RBP7.14□□□□□ -1.27
SYNE1-213ENST00000448038 CYP4V2Q6ZWL3 525 aaPredicted RBP7.14□□□□□ -1.27
SYNE1-213ENST00000448038 CHCHD4Q8N4Q1 142 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 GIPC3Q8TF64 312 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 RHBDF1Q96CC6 855 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 DTNBP1Q96EV8 351 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 JSRP1Q96MG2 331 aaPredicted RBP7.14□□□□□ -1.27
SYNE1-213ENST00000448038 CAMK1GQ96NX5 476 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 KCNC2Q96PR1 638 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 GPRC5BQ9NZH0 403 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 THAP10Q9P2Z0 257 aaPredicted RBP7.14□□□□□ -1.27
SYNE1-213ENST00000448038 CLEC4EQ9ULY5 219 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 DNAJC15Q9Y5T4 150 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 ARFGEF1Q9Y6D6 1849 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 FAM86C2PA6NEL3 165 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 BTN3A3O00478 584 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 COQ9O75208 318 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 GADD45GO95257 159 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 THRBP10828 461 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 BCKDHAP12694 445 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 PRG2P13727 222 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 CCR7P32248 378 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 RPS9P46781 194 aaKnown RBP7.14□□□□□ -1.27
SYNE1-213ENST00000448038 NRG3P56975 720 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 ERVPABLB-1P60509 514 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 LGALS3BPQ08380 585 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 LPAL2Q16609 132 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 DEFB134Q4QY38 66 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 RABL3Q5HYI8 236 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 BNIPLQ7Z465 357 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 WDR36Q8NI36 951 aaKnown RBP7.14□□□□□ -1.27
SYNE1-213ENST00000448038 KLHL1Q9NR64 748 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 MS4A12Q9NXJ0 267 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 ABI3Q9P2A4 366 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 ERGIC3Q9Y282 383 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 AK5Q9Y6K8 562 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 GFRA2O00451 464 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 NME6O75414 186 aaPredicted RBP7.14□□□□□ -1.27
SYNE1-213ENST00000448038 OPN1SWP03999 348 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 CCNA2P20248 432 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 TCEA1P23193 301 aaKnown RBP7.14□□□□□ -1.27
SYNE1-213ENST00000448038 DEFA1P59665 94 aa7.14□□□□□ -1.27
SYNE1-213ENST00000448038 DEFA3P59666 94 aa7.14□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 37.2 ms