RNA–Protein interactions for RNA: ENST00000437679.3

LIMS3-201, Transcript of LIM zinc finger domain containing 3, humanhuman

TSL 1 (best) BASIC

Gene LIMS3, Length 1,220 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS3-201ENST00000437679 RGS1Q08116 209 aa14.42□□□□□ -0.1
LIMS3-201ENST00000437679 PWP1Q13610 501 aa14.42□□□□□ -0.1
LIMS3-201ENST00000437679 OR4D1Q15615 310 aa14.42□□□□□ -0.1
LIMS3-201ENST00000437679 SULT1C3Q6IMI6 304 aa14.42□□□□□ -0.1
LIMS3-201ENST00000437679 IFT20Q8IY31 132 aa14.42□□□□□ -0.1
LIMS3-201ENST00000437679 KLHDC8AQ8IYD2 350 aa14.42□□□□□ -0.1
LIMS3-201ENST00000437679 GALNT16Q8N428 558 aa14.42□□□□□ -0.1
LIMS3-201ENST00000437679 AMER3Q8N944 861 aa14.42□□□□□ -0.1
LIMS3-201ENST00000437679 KCT2Q8NC54 265 aa14.42□□□□□ -0.1
LIMS3-201ENST00000437679 OR9A4Q8NGU2 314 aa14.42□□□□□ -0.1
LIMS3-201ENST00000437679 ZCCHC10Q8TBK6 192 aa14.42□□□□□ -0.1
LIMS3-201ENST00000437679 STAG3L4Q8TBR4 150 aa14.42□□□□□ -0.1
LIMS3-201ENST00000437679 CAPS2Q9BXY5 557 aa14.42□□□□□ -0.1
LIMS3-201ENST00000437679 ACSS3Q9H6R3 686 aa14.42□□□□□ -0.1
LIMS3-201ENST00000437679 MLXIPLQ9NP71 852 aa14.42□□□□□ -0.1
LIMS3-201ENST00000437679 ACOT9Q9Y305 439 aa14.42□□□□□ -0.1
LIMS3-201ENST00000437679 MRPS2Q9Y399 296 aaKnown RBP14.42□□□□□ -0.1
LIMS3-201ENST00000437679 SCN3AQ9NY46 2000 aa14.42□□□□□ -0.1
LIMS3-201ENST00000437679 GCN1Q92616 2671 aaKnown RBP14.42□□□□□ -0.1
LIMS3-201ENST00000437679 A0A087X1B8 175 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 SOCS6O14544 535 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 NDUFS4O43181 175 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 HEXBP07686 556 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 LTA4HP09960 611 aaKnown RBP14.41□□□□□ -0.1
LIMS3-201ENST00000437679 IL1RNP18510 177 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 CXCR2P25025 360 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 ECHS1P30084 290 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 AHRP35869 848 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 CASRP41180 1078 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 GDF5P43026 501 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 SCTRP47872 440 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 EMP2P54851 167 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 MAT1AQ00266 395 aaKnown RBP14.41□□□□□ -0.1
LIMS3-201ENST00000437679 AIMP2Q13155 320 aaKnown RBP14.41□□□□□ -0.1
LIMS3-201ENST00000437679 RAPSNQ13702 412 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 BMPR2Q13873 1038 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 RBBP5Q15291 538 aaKnown RBP14.41□□□□□ -0.1
LIMS3-201ENST00000437679 SYT16Q17RD7 645 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 C18orf21Q32NC0 220 aaPredicted RBP14.41□□□□□ -0.1
LIMS3-201ENST00000437679 TUBB8Q3ZCM7 444 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 KIRREL2Q6UWL6 708 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 LAPTM4BQ86VI4 370 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 HPS6Q86YV9 775 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 ZNF740Q8NDX6 193 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 EXT2Q93063 718 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 NUDT9Q9BW91 350 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 FUT8Q9BYC5 575 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 TGIF2Q9GZN2 237 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 ALG9Q9H6U8 611 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 DNAJC11Q9NVH1 559 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 GPRC5BQ9NZH0 403 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 ZFP69BQ9UJL9 534 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 SLC22A7Q9Y694 548 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 IKBKGQ9Y6K9 419 aa14.41□□□□□ -0.1
LIMS3-201ENST00000437679 IDSB3KWA1 339 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 SGK494L7N484 410 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 MAP2K7O14733 419 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 TAPBPO15533 448 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 STK16O75716 305 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 ALPPP05187 535 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 INHBAP08476 426 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 C1GALT1C1LP0DN25 315 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 ACPPP15309 386 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 TFEBP19484 476 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 ITGA3P26006 1051 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 GGT5P36269 586 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 GMPRP36959 345 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 HSPA7P48741 367 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 SKP1P63208 163 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 CDC16Q13042 620 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 MYBPC3Q14896 1274 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 HERC3Q15034 1050 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 VWA5B1Q5TIE3 1220 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 IRAK1BP1Q5VVH5 260 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 TAOK1Q7L7X3 1001 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 PRSS41Q7RTY9 318 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 ISCA2Q86U28 154 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 ZC3H7AQ8IWR0 971 aaKnown RBP14.4□□□□□ -0.1
LIMS3-201ENST00000437679 PDPRQ8NCN5 879 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 TRPV3Q8NET8 790 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 OR11G2Q8NGC1 345 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 OR51Q1Q8NH59 317 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 SMAD5Q99717 465 aaKnown RBP14.4□□□□□ -0.1
LIMS3-201ENST00000437679 TMEM79Q9BSE2 394 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 SPNS1Q9H2V7 528 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 SNX15Q9NRS6 342 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 IGSF5Q9NSI5 407 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 NUDT4Q9NZJ9 180 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 NFU1Q9UMS0 254 aa14.4□□□□□ -0.1
LIMS3-201ENST00000437679 DOCK10Q96BY6 2186 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 URADA6NGE7 173 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 SUPT3HB4E1H0 165 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 MASP2O00187 686 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 PCDH17O14917 1159 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 CLGNO14967 610 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 DPM1O60762 260 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 KERAO60938 352 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 SUPT3HO75486 399 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 KLHL18O94889 574 aa14.39□□□□□ -0.11
LIMS3-201ENST00000437679 C2P06681 752 aa14.39□□□□□ -0.11
Retrieved 100 of 20,778 RNA–protein pairs in 35.7 ms