RNA–Protein interactions for RNA: ENST00000428287.6

RIF1-203, Transcript of replication timing regulatory factor 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene RIF1, Length 7,722 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
RIF1-203ENST00000428287 KCNE1P15382 129 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 SLC19A1P41440 591 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 BRCC3P46736 316 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 CYP4F3Q08477 520 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 DOC2BQ14184 412 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 INO80DQ53TQ3 878 aaPredicted RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 PAQR3Q6TCH7 311 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 LBX2Q6XYB7 198 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 LRRC56Q8IYG6 542 aaPredicted RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 NLGN4YQ8NFZ3 816 aaPredicted RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 OR8J2Q8NGG1 315 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 AHCYL2Q96HN2 611 aaKnown RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 PPP3R2Q96LZ3 170 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 PRR14Q9BWN1 585 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 SPATA9Q9BWV2 254 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 MIXL1Q9H2W2 232 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 TMEM184CQ9NVA4 438 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 RBM22Q9NW64 420 aaKnown RBP eCLIP4.97□□□□□ -1.611e-7■■■■■ 41.1
RIF1-203ENST00000428287 LSM2Q9Y333 95 aaKnown RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 KRBOX1C9JBD0 128 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 CASC3O15234 703 aaKnown RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 PRPH2P23942 346 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 UQCRC1P31930 480 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 CHRNA4P43681 627 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 ZMAT1Q5H9K5 638 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 SPANXN4Q5MJ08 99 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 FBXO47Q5MNV8 452 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 GPRIN3Q6ZVF9 776 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 PRSS42Q7Z5A4 293 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 RTP3Q9BQQ7 232 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 KCNH6Q9H252 994 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 UCKL1Q9NWZ5 548 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 ADPRHL2Q9NX46 363 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 EVLQ9UI08 416 aaPredicted RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 ZNF98A6NK75 572 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 FGF10O15520 208 aaPredicted RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 RFPL3O75679 317 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 LINC00032P0C843 101 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 PSKH1P11801 424 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 POU3F3P20264 500 aaPredicted RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 TMEM132BQ14DG7 1078 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 CELF3Q5SZQ8 465 aaKnown RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 ZNF770Q6IQ21 691 aaPredicted RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 MRNIPQ6NTE8 343 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 CBLL1Q75N03 491 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 PIM3Q86V86 326 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 RASGRP3Q8IV61 690 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 DEPDC4Q8N2C3 294 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 UTP15Q8TED0 518 aaKnown RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 SLC6A18Q96N87 628 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 NTMT1Q9BV86 223 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 TMEM39AQ9NV64 488 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 MCUBQ9NWR8 336 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 MAT2BQ9NZL9 334 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 ENOPH1Q9UHY7 261 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 RPS6KA6Q9UK32 745 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 COL4A5P29400 1685 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 CPNE3O75131 537 aaKnown RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 IFNA16P05015 189 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 MMP2P08253 660 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 ANXA8P13928 327 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 ITGB6P18564 788 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 RPL17P18621 184 aaKnown RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 CLCN4P51793 760 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 TUSC1Q2TAM9 212 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 PXDC1Q5TGL8 231 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 HTR3DQ70Z44 454 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 EIF3MQ7L2H7 374 aaKnown RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 ZNF367Q7RTV3 350 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 FBXO30Q8TB52 745 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 LRRC20Q8TCA0 184 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 KCNJ9Q92806 393 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 EXOC2Q96KP1 924 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 KATNB1Q9BVA0 655 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 NXF3Q9H4D5 531 aaKnown RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 RANBP3Q9H6Z4 567 aaPredicted RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 ISYNA1Q9NPH2 558 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 TRMT13Q9NUP7 481 aaKnown RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 CD274Q9NZQ7 290 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 SF3B6Q9Y3B4 125 aaKnown RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 SAMHD1Q9Y3Z3 626 aaKnown RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 LRRC14BA6NHZ5 514 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 ZAR1LA6NP61 321 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 NT5C1B-RDH14C9J2C7 533 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 ABCD4O14678 606 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 PDE9AO76083 593 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 STSP08842 583 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 MAN2A2P49641 1150 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 ZNF683Q8IZ20 524 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 PPHLN1Q8NEY8 458 aaKnown RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 FAM120BQ96EK7 910 aaKnown RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 CDKN2AIPNLQ96HQ2 116 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 THUMPD3Q9BV44 507 aaKnown RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 DNTTIP1Q9H147 329 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 RNF167Q9H6Y7 350 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 DBNDD1Q9H9R9 158 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 PLEKHB1Q9UF11 243 aaPredicted RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 TESQ9UGI8 421 aaKnown RBP4.97□□□□□ -1.61
RIF1-203ENST00000428287 NPTNQ9Y639 398 aa4.97□□□□□ -1.61
RIF1-203ENST00000428287 SNTNA6NMZ2 147 aa4.96□□□□□ -1.61
Retrieved 100 of 20,778 RNA–protein pairs in 31.7 ms