RNA–Protein interactions for RNA: ENST00000413716.6

CCDC88A-204, Transcript of coiled-coil domain containing 88A, humanhuman

TSL 1 (best) BASIC

Gene CCDC88A, Length 9,586 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88A-204ENST00000413716 OR5H15A6NDH6 313 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 OR5H14A6NHG9 310 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 OR5H1A6NKK0 313 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 IQCF5A8MTL0 148 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 RECQL4O94761 1208 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 NRIP1P48552 1158 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 AKR1C2P52895 323 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 FOXM1Q08050 763 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 FAM199XQ6PEV8 388 aaPredicted RBP12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 PLA2G15Q8NCC3 412 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 SMG8Q8ND04 991 aaKnown RBP12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 OR6Q1Q8NGQ2 317 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 LGMNQ99538 433 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 A0A1W2PPL8 197 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 PAHP00439 452 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 CMC1Q7Z7K0 106 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 UNC93AQ86WB7 457 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 PACRGLQ8N7B6 248 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 LRFN5Q96NI6 719 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 MEPEQ9NQ76 525 aaPredicted RBP12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 A0A1W2PQ45 241 aaPredicted RBP12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 A0A1W2PQY0 241 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 CD9P21926 228 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 RPL26P61254 145 aaKnown RBP12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 ZPBP2Q6X784 338 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 SLC9A9Q8IVB4 645 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 ZNF675Q8TD23 568 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 SLC13A3Q8WWT9 602 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 SLC25A44Q96H78 314 aaPredicted RBP12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 DHDHQ9UQ10 334 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 RBBP9O75884 186 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 ART1P52961 327 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 SYT16Q17RD7 645 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 ELP2Q6IA86 826 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 TRMT2AQ8IZ69 625 aaKnown RBP12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 OR2AP1Q8NGE2 309 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 FAM83CQ9BQN1 747 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 RAB11FIP5Q9BXF6 653 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 WDR55Q9H6Y2 383 aaPredicted RBP12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 OR6C65A6NJZ3 312 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 MAP2K7O14733 419 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 SGCEO43556 437 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 IL1AP01583 271 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 NFIXQ14938 502 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 STYXQ8WUJ0 223 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 PSD2Q9BQI7 771 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 DPCDQ9BVM2 203 aaPredicted RBP12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 ASB6Q9NWX5 421 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 KLHL13Q9P2N7 655 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 CBY1Q9Y3M2 126 aa12.97□□□□□ -0.33
CCDC88A-204ENST00000413716 CYB5BO43169 146 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 STK17BO94768 372 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 DLDP09622 509 aaKnown RBP12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 RPS12P25398 132 aaKnown RBP12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 LTKP29376 864 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 MTPNP58546 118 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 TUSC3Q13454 348 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 GPR68Q15743 365 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 CERS6Q6ZMG9 384 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 FUNDC2Q9BWH2 189 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 KCNIP1Q9NZI2 227 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 EFCAB7A8K855 629 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 APODP05090 189 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 PRKCAP17252 672 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 MLLT3P42568 568 aaPredicted RBP12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 PLP2Q04941 152 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 UBE2UQ5VVX9 321 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 ARHGAP11AQ6P4F7 1023 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 UGT2A3Q6UWM9 527 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 RDH10Q8IZV5 341 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 NR4A3Q92570 626 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 SENP8Q96LD8 212 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 LRRC42Q9Y546 428 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 ETFAP13804 333 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 AKR1C4P17516 323 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 CD6P30203 668 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 ACTR1AP61163 376 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 ERVK-25P63136 954 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 BBS12Q6ZW61 710 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 CHCHD4Q8N4Q1 142 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 CCDC71LQ8N9Z2 235 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 SNRNP25Q9BV90 132 aaKnown RBP12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 GBA3Q9H227 469 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 HIPK2Q9H2X6 1198 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 GOSR2O14653 212 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 ADH1AP07327 375 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 EVI2BP34910 448 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 NR0B1P51843 470 aaKnown RBP12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 PRAMEF13Q5VWM6 474 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 TMPRSS9Q7Z410 1059 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 LGI4Q8N135 537 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 CCDC74AQ96AQ1 378 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 CCDC74BQ96LY2 380 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 SDHAF2Q9NX18 166 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 REV1Q9UBZ9 1251 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 MTMR11A4FU01 709 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 BTNL10A8MVZ5 291 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 EI24O14681 340 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 TXNL1O43396 289 aa12.96□□□□□ -0.33
CCDC88A-204ENST00000413716 INSRRP14616 1297 aa12.96□□□□□ -0.33
Retrieved 100 of 20,778 RNA–protein pairs in 21.7 ms