RNA–Protein interactions for RNA: ENST00000413442.5

USP54-202, Transcript of ubiquitin specific peptidase 54, humanhuman

TSL 4

Gene USP54, Length 543 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP54-202ENST00000413442 CCL11P51671 97 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 ALDH18A1P54886 795 aaKnown RBP6.07□□□□□ -1.44
USP54-202ENST00000413442 SLC7A5Q01650 507 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 ZNF33BQ06732 778 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 KLC1Q07866 573 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 NFATC3Q12968 1075 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 CDC16Q13042 620 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 RASA2Q15283 850 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 RBBP7Q16576 425 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 DEFB110Q30KQ9 67 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 TMEM35AQ53FP2 167 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 PRAMEF17Q5VTA0 474 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 C1orf189Q5VU69 101 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 AGAP7PQ5VUJ5 663 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 LIPJQ5W064 366 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 LCN10Q6JVE6 187 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 IGFL2Q6UWQ7 119 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 TMIGD1Q6UXZ0 262 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 CHSY3Q70JA7 882 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 LRRC70Q7Z2Q7 622 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 MRGPREQ86SM8 312 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 TAX1BP1Q86VP1 789 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 CEP97Q8IW35 865 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 GALNT16Q8N428 558 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 ZADH2Q8N4Q0 377 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 AFAP1L2Q8N4X5 818 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 PPFIBP2Q8ND30 876 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 ARMC2Q8NEN0 867 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 MYRIPQ8NFW9 859 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 ACMSDQ8TDX5 336 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 ANKRD49Q8WVL7 239 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 SLC44A1Q8WWI5 657 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 NEIL2Q969S2 332 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 ISL2Q96A47 359 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 REPS1Q96D71 796 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 SMIM10Q96HG1 83 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 FAR2Q96K12 515 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 TSNARE1Q96NA8 513 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 AGAP4Q96P64 663 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 NRTNQ99748 197 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 CRB3Q9BUF7 120 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 CD244Q9BZW8 370 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 RNF32Q9H0A6 362 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 RHBGQ9H310 441 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 EPS8L2Q9H6S3 715 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 SMYD2Q9NRG4 433 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 SLC22A11Q9NSA0 550 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 DNAJC11Q9NVH1 559 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 RIC8BQ9NVN3 520 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 MS4A12Q9NXJ0 267 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 NUDT4Q9NZJ9 180 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 CD274Q9NZQ7 290 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 TRPC4Q9UBN4 977 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 DMGDHQ9UI17 866 aaKnown RBP6.07□□□□□ -1.44
USP54-202ENST00000413442 RNF112Q9ULX5 631 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 PPT2Q9UMR5 302 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 SLC22A14Q9Y267 594 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 MRPS33Q9Y291 106 aaKnown RBP6.07□□□□□ -1.44
USP54-202ENST00000413442 KLHL20Q9Y2M5 609 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 PCDHGB6Q9Y5F9 930 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 PCDHGA11Q9Y5H2 935 aa6.07□□□□□ -1.44
USP54-202ENST00000413442 MRPS18BQ9Y676 258 aaKnown RBP6.07□□□□□ -1.44
USP54-202ENST00000413442 MGAQ8IWI9 3026 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 NSG1A0A0A6YYJ2 146 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 ARGFXA6NJG6 315 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 MAGEB17A8MXT2 336 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 CXorf49A8MYA2 514 aaPredicted RBP6.06□□□□□ -1.44
USP54-202ENST00000413442 IDSB3KWA1 339 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 K7EPI3 171 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 CDC7O00311 574 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 CLDN4O14493 209 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 HAT1O14929 419 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 KLK8O60259 260 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 LCMT2O60294 686 aaKnown RBP6.06□□□□□ -1.44
USP54-202ENST00000413442 GALR3O60755 368 aaPredicted RBP6.06□□□□□ -1.44
USP54-202ENST00000413442 KERAO60938 352 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 C1QL1O75973 258 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 WFS1O76024 890 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 WDR47O94967 919 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 WISP1O95388 367 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 SERPINA7P05543 415 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 C2P06681 752 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 UMODP07911 640 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 GSTA1P08263 222 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 SNRPAP09012 282 aaKnown RBP6.06□□□□□ -1.44
USP54-202ENST00000413442 SLC35E2BP0CK96 405 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 CDH1P12830 882 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 ACPPP15309 386 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 OTX2P32243 289 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 PIK3CBP42338 1070 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 OR1D4P47884 311 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 HSD17B7P56937 341 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 RPS18P62269 152 aaKnown RBP6.06□□□□□ -1.44
USP54-202ENST00000413442 PHEXP78562 749 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 REEP5Q00765 189 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 KCNC4Q03721 635 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 IL10RAQ13651 578 aa6.06□□□□□ -1.44
USP54-202ENST00000413442 EFTUD2Q15029 972 aaKnown RBP eCLIP6.06□□□□□ -1.44
USP54-202ENST00000413442 PCBP2Q15366 365 aaKnown RBP eCLIP6.06□□□□□ -1.44
USP54-202ENST00000413442 TSNQ15631 228 aaKnown RBP6.06□□□□□ -1.44
Retrieved 100 of 20,778 RNA–protein pairs in 20.8 ms