RNA–Protein interactions for RNA: ENST00000413186.6

SYNE1-211, Transcript of spectrin repeat containing nuclear envelope protein 1, humanhuman

TSL 5 BASIC

Gene SYNE1, Length 4,860 nt, Biotype protein coding, Subcellular localisation Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SYNE1-211ENST00000413186 ERI3O43414 337 aaKnown RBP8.24□□□□□ -1.09
SYNE1-211ENST00000413186 CTSCP53634 463 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 TBPL1P62380 186 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 GALNT1Q10472 559 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-211ENST00000413186 CAMK1Q14012 370 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 LIX1Q8N485 282 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 RASGEF1AQ8N9B8 481 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 BHLHE22Q8NFJ8 381 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-211ENST00000413186 FIG4Q92562 907 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 PROX1Q92786 737 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 NAT6Q93015 286 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 ECHDC3Q96DC8 303 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 CAMK1GQ96NX5 476 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 TRAPPC9Q96Q05 1148 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 HBEGFQ99075 208 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 FOXQ1Q9C009 403 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 ADNPQ9H2P0 1102 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 FBRSL1Q9HCM7 1045 aaKnown RBP8.24□□□□□ -1.09
SYNE1-211ENST00000413186 PDE7BQ9NP56 450 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 RPS6KA6Q9UK32 745 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 PDE10AQ9Y233 779 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 PEX11BO96011 259 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 CD9P21926 228 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 LHCGRP22888 699 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 RRM2P31350 389 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 DLX2Q07687 328 aaPredicted RBP8.24□□□□□ -1.09
SYNE1-211ENST00000413186 PCBP2Q15366 365 aaKnown RBP eCLIP8.24□□□□□ -1.09
SYNE1-211ENST00000413186 MINDY4Q4G0A6 757 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 EID3Q8N140 333 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 SETD9Q8NE22 299 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 OR4A15Q8NGL6 344 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 CDK15Q96Q40 435 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 EPS8L2Q9H6S3 715 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 S100A14Q9HCY8 104 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 DDX18Q9NVP1 670 aaKnown RBP8.24□□□□□ -1.09
SYNE1-211ENST00000413186 CLEC1BQ9P126 229 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 MAGEL2Q9UJ55 1249 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 FBXW2Q9UKT8 454 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 PLAGL1Q9UM63 463 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 KNL1Q8NG31 2342 aa8.24□□□□□ -1.09
SYNE1-211ENST00000413186 RALGAPA2Q2PPJ7 1873 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 OR6C74A6NCV1 312 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 SAC3D1A6NKF1 404 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 AGRPO00253 132 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 NDUFS4O43181 175 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 CBFA2T3O75081 653 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 KRT36O76013 467 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 TGFB1P01137 390 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 UMPSP11172 480 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 FGF3P11487 239 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-211ENST00000413186 F3P13726 295 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 CDKL1Q00532 357 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 CYP4F3Q08477 520 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 C4orf46Q504U0 113 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 HENMT1Q5T8I9 393 aaKnown RBP8.23□□□□□ -1.09
SYNE1-211ENST00000413186 VWA5B1Q5TIE3 1220 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 P3H2Q8IVL5 708 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 CLHC1Q8NHS4 586 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 ZNF483Q8TF39 744 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-211ENST00000413186 XKR8Q9H6D3 395 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 TAS2R1Q9NYW7 299 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 EPHA6Q9UF33 1036 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 FAM234BA2RU67 622 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 KLK3P07288 261 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-211ENST00000413186 NR2F1P10589 423 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 NPR2P20594 1047 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 CCR7P32248 378 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 PRR5P85299 388 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 CTBSQ01459 385 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 BCL7AQ4VC05 210 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 Q8N9G6 341 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-211ENST00000413186 POMGNT2Q8NAT1 580 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 PNPT1Q8TCS8 783 aaKnown RBP8.23□□□□□ -1.09
SYNE1-211ENST00000413186 SPPL2AQ8TCT8 520 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 UBASH3BQ8TF42 649 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 L3HYPDHQ96EM0 354 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 EHD1Q9H4M9 534 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 IGSF5Q9NSI5 407 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 TMEM184CQ9NVA4 438 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 OR6C2Q9NZP2 312 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 ZIM2Q9NZV7 527 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 C5orf51A6NDU8 294 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 GRXCR2A6NFK2 248 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 H7BY64 318 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 ITM2AO43736 263 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 UGDHO60701 494 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 SERPINB7O75635 380 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 PROS1P07225 676 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 JUPP14923 745 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 IL9P15248 144 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 CCT8P50990 548 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 IST1P53990 364 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 RPS15AP62244 130 aaKnown RBP8.23□□□□□ -1.09
SYNE1-211ENST00000413186 EIF4EBP2Q13542 120 aaPredicted RBP8.23□□□□□ -1.09
SYNE1-211ENST00000413186 KIR2DS3Q14952 304 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 OR4D1Q15615 310 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 VPS26BQ4G0F5 336 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 UNC50Q53HI1 259 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 MTX3Q5HYI7 312 aa8.23□□□□□ -1.09
SYNE1-211ENST00000413186 CDHR3Q6ZTQ4 885 aa8.23□□□□□ -1.09
Retrieved 100 of 20,778 RNA–protein pairs in 20.6 ms