RNA–Protein interactions for RNA: ENST00000409945.1

USP40-202, Transcript of ubiquitin specific peptidase 40, humanhuman

TSL 2 BASIC

Gene USP40, Length 1,946 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP40-202ENST00000409945 CETN2P41208 172 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 SLC1A1P43005 524 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 NOVA1P51513 510 aaKnown RBP6.23□□□□□ -1.41
USP40-202ENST00000409945 RHAGQ02094 409 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 IL10RBQ08334 325 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 SMTNL2Q2TAL5 461 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 MYLK3Q32MK0 819 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 POM121L1PQ3SYA9 428 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 ANXA2RQ3ZCQ2 193 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 RAB6CQ53S08 254 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 ZNF805Q5CZA5 627 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 KCNT1Q5JUK3 1230 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 GDPD4Q6W3E5 623 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 RBM44Q6ZP01 1051 aaKnown RBP6.23□□□□□ -1.41
USP40-202ENST00000409945 BZW1Q7L1Q6 419 aaKnown RBP6.23□□□□□ -1.41
USP40-202ENST00000409945 R3HCC1LQ7Z5L2 792 aaKnown RBP6.23□□□□□ -1.41
USP40-202ENST00000409945 ZSCAN2Q7Z7L9 614 aaPredicted RBP6.23□□□□□ -1.41
USP40-202ENST00000409945 IQCHQ86VS3 1027 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 HCAR2Q8TDS4 363 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 RFFLQ8WZ73 363 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 HMCESQ96FZ2 354 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 FERMT1Q9BQL6 677 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 RAB6CQ9H0N0 254 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 ATP13A3Q9H7F0 1226 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 CD93Q9NPY3 652 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 GON4LQ3T8J9 2241 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 PI4KAP42356 2102 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 TMEM110-MUSTN1A8MSY1 372 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 VILLO15195 856 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 FLRT2O43155 660 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 SPOPO43791 374 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 PRAMEF11O60813 436 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 TRIM16O95361 564 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 METTL18O95568 372 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 UGT2B4P06133 528 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 ADRB3P13945 408 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 TGM2P21980 687 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 HNRNPA2B1P22626 353 aaKnown RBP6.23□□□□□ -1.41
USP40-202ENST00000409945 DRD3P35462 400 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 MAGEA1P43355 309 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 CSNK1EP49674 416 aaKnown RBP6.23□□□□□ -1.41
USP40-202ENST00000409945 NAP1L1P55209 391 aaKnown RBP6.23□□□□□ -1.41
USP40-202ENST00000409945 RPP30P78346 268 aaKnown RBP6.23□□□□□ -1.41
USP40-202ENST00000409945 BCL2L1Q07817 233 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 MESDQ14696 234 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 NAA25Q14CX7 972 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 ERCC6LQ2NKX8 1250 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 TMEM88Q6PEY1 159 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 BRAT1Q6PJG6 821 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 ADGRG6Q86SQ4 1221 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 HORMAD1Q86X24 394 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 SETD9Q8NE22 299 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 OR52N4Q8NGI2 321 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 CXorf40AQ8TE69 158 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 SETD7Q8WTS6 366 aaKnown RBP6.23□□□□□ -1.41
USP40-202ENST00000409945 CELF6Q96J87 481 aaKnown RBP6.23□□□□□ -1.41
USP40-202ENST00000409945 ZNF641Q96N77 438 aaPredicted RBP6.23□□□□□ -1.41
USP40-202ENST00000409945 ZNF670Q9BS34 389 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 CWC15Q9P013 229 aaKnown RBP6.23□□□□□ -1.41
USP40-202ENST00000409945 SLC25A10Q9UBX3 287 aaPredicted RBP6.23□□□□□ -1.41
USP40-202ENST00000409945 IPO11Q9UI26 975 aaKnown RBP6.23□□□□□ -1.41
USP40-202ENST00000409945 SARDHQ9UL12 918 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 PPP2R2CQ9Y2T4 447 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 MFHAS1Q9Y4C4 1052 aa6.23□□□□□ -1.41
USP40-202ENST00000409945 NYNRINQ9P2P1 1898 aaKnown RBP6.22□□□□□ -1.41
USP40-202ENST00000409945 A0A1B0GVT2 93 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 TLR4O00206 839 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 CDX4O14627 284 aaPredicted RBP6.22□□□□□ -1.41
USP40-202ENST00000409945 FPGTO14772 594 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 LATO43561 262 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 KCNK5O95279 499 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 IGHV4-34P06331 123 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 ENO1P06733 434 aaKnown RBP6.22□□□□□ -1.41
USP40-202ENST00000409945 CCDC175P0C221 793 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 MAT2AP31153 395 aaKnown RBP6.22□□□□□ -1.41
USP40-202ENST00000409945 TNNT3P45378 269 aaPredicted RBP6.22□□□□□ -1.41
USP40-202ENST00000409945 CSNK1DP48730 415 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 AP1S1P61966 158 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 HLA-BQ31612 363 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 PIP5KL1Q5T9C9 394 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 MARC1Q5VT66 337 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 FAAH2Q6GMR7 532 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 LEKR1Q6ZMV7 388 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 AMER2Q8N7J2 671 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 SCAIQ8N9R8 606 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 CSPG4P5Q96PW8 444 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 TRIM7Q9C029 511 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 SLC39A8Q9C0K1 460 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 LRRC19Q9H756 370 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 ZNF304Q9HCX3 659 aa6.22□□□□□ -1.41
USP40-202ENST00000409945 TNRC6BQ9UPQ9 1833 aaKnown RBP6.22□□□□□ -1.41
USP40-202ENST00000409945 DMXL1Q9Y485 3027 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 DYTNA2CJ06 578 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 LRRD1A4D1F6 860 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 SLC31A1O15431 190 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 TM7SF2O76062 418 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 IGLV2-14P01704 120 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 CTSLP07711 333 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 ALPPL2P10696 532 aa6.21□□□□□ -1.41
USP40-202ENST00000409945 CCR9P51686 369 aa6.21□□□□□ -1.41
Retrieved 100 of 20,778 RNA–protein pairs in 37.1 ms