RNA–Protein interactions for RNA: ENST00000409441.5

LIMS1-204, Transcript of LIM zinc finger domain containing 1, humanhuman

APPRIS ALT1 TSL 1 (best) BASIC

Gene LIMS1, Length 1,627 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMS1-204ENST00000409441 OR10G6Q8NH81 332 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 ATL1Q8WXF7 558 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 RHBDF1Q96CC6 855 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 FBXL8Q96CD0 374 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 AHCYL2Q96HN2 611 aaKnown RBP12.91□□□□□ -0.34
LIMS1-204ENST00000409441 GPATCH1Q9BRR8 931 aaKnown RBP12.91□□□□□ -0.34
LIMS1-204ENST00000409441 RAB11FIP5Q9BXF6 653 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 ATG10Q9H0Y0 220 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 SLC32A1Q9H598 525 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 HRASLS2Q9NWW9 162 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 ZIM2Q9NZV7 527 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 SPATA7Q9P0W8 599 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 PACSIN3Q9UKS6 424 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 TIMM22Q9Y584 194 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 PTGDR2Q9Y5Y4 395 aa12.91□□□□□ -0.34
LIMS1-204ENST00000409441 IGHV1OR21-1A0A087WYE8 117 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 DYTNA2CJ06 578 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 NR5A2O00482 541 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 STAMBPO95630 424 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 PROS1P07225 676 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 C8BP07358 591 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 ERGP11308 486 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 CD1CP29017 333 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 IMPA1P29218 277 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 PIK3CGP48736 1102 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 PPM1FP49593 454 aaPredicted RBP12.9□□□□□ -0.34
LIMS1-204ENST00000409441 HNMTP50135 292 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 ERVPABLB-1P60509 514 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 CCL7P80098 99 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 TAP2Q03519 686 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 KLHL35Q6PF15 583 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 BLOC1S3Q6QNY0 202 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 USP53Q70EK8 1073 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 GOLGA7Q7Z5G4 137 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 SPRED1Q7Z699 444 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 APLFQ8IW19 511 aaPredicted RBP12.9□□□□□ -0.34
LIMS1-204ENST00000409441 SYTL1Q8IYJ3 562 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 ADGRF3Q8IZF5 1079 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 LINC01555Q8NAE3 123 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 FAM122AQ96E09 287 aa12.9□□□□□ -0.34
LIMS1-204ENST00000409441 DUS3LQ96G46 650 aaKnown RBP12.9□□□□□ -0.34
LIMS1-204ENST00000409441 NOL11Q9H8H0 719 aaKnown RBP12.9□□□□□ -0.34
LIMS1-204ENST00000409441 PRSS51A0A1B0GVH4 220 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 FAM221BA6H8Z2 402 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 ZNF839A8K0R7 811 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 VGLL3A8MV65 326 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 SLC30A4O14863 429 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 CASC3O15234 703 aaKnown RBP12.89□□□□□ -0.35
LIMS1-204ENST00000409441 TAPBPO15533 448 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 GP1BAP07359 652 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 CHRM5P08912 532 aaPredicted RBP12.89□□□□□ -0.35
LIMS1-204ENST00000409441 POLR2CP19387 275 aaPredicted RBP12.89□□□□□ -0.35
LIMS1-204ENST00000409441 CSRP1P21291 193 aaKnown RBP12.89□□□□□ -0.35
LIMS1-204ENST00000409441 GPLD1P80108 840 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 MRPS22P82650 360 aaKnown RBP12.89□□□□□ -0.35
LIMS1-204ENST00000409441 NAE1Q13564 534 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 TRIP10Q15642 601 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 SMU1Q2TAY7 513 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 C18orf21Q32NC0 220 aaPredicted RBP12.89□□□□□ -0.35
LIMS1-204ENST00000409441 FBXO48Q5FWF7 155 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 ARMC6Q6NXE6 501 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 GLRX5Q86SX6 157 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 TCAIMQ8N3R3 496 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 SMPDL3AQ92484 453 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 NCSTNQ92542 709 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 RSC1A1Q92681 617 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 LRGUKQ96M69 825 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 BTBD9Q96Q07 612 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 ABCG4Q9H172 646 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 LRRN3Q9H3W5 708 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 EPB41L1Q9H4G0 881 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 SPHK1Q9NYA1 384 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 ABCD2Q9UBJ2 740 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 GIMAP2Q9UG22 337 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 CDV3Q9UKY7 258 aaKnown RBP12.89□□□□□ -0.35
LIMS1-204ENST00000409441 ASB1Q9Y576 335 aa12.89□□□□□ -0.35
LIMS1-204ENST00000409441 A0A1W2PP18 115 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 A0A1W2PQM1 296 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 PIPSLA2A3N6 862 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 MAGEA13PA6NCF6 341 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 OR5K3A6NET4 321 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 OR7A17O14581 309 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 WDR47O94967 919 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 RPLP0P05388 317 aaKnown RBP12.88□□□□□ -0.35
LIMS1-204ENST00000409441 CAPN3P20807 821 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 GGT5P36269 586 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 GDF5P43026 501 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 KCNK10P57789 538 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 ILKQ13418 452 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 SQSTM1Q13501 440 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 TSTA3Q13630 321 aaPredicted RBP12.88□□□□□ -0.35
LIMS1-204ENST00000409441 RCAN2Q14206 197 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 ATP6AP1LQ52LC2 224 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 CCDC157Q569K6 752 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 LETMD1Q6P1Q0 360 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 SUSD1Q6UWL2 747 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 RETREG3Q86VR2 466 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 SPATA24Q86W54 205 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 OOSP2Q86WS3 158 aa12.88□□□□□ -0.35
LIMS1-204ENST00000409441 LRRC56Q8IYG6 542 aaPredicted RBP12.88□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms