RNA–Protein interactions for RNA: ENST00000409435.5

SCN9A-202, Transcript of sodium voltage-gated channel alpha subunit 9, humanhuman

APPRIS ALT1 TSL 5 BASIC

Gene SCN9A, Length 5,967 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCN9A-202ENST00000409435 KCT2Q8NC54 265 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 SNX33Q8WV41 574 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 NXNL1Q96CM4 212 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 VPS35Q96QK1 796 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 HIST1H2AAQ96QV6 131 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 EQTNQ9NQ60 294 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 PRTFDC1Q9NRG1 225 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 ANKMY1Q9P2S6 941 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 C3orf18Q9UK00 162 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 PEX16Q9Y5Y5 336 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 SCN4AP35499 1836 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 WRBO00258 174 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 DDX3YO15523 660 aaKnown RBP7.08□□□□□ -1.28
SCN9A-202ENST00000409435 SIGLEC6O43699 453 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 MTX2O75431 263 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 CLDN7O95471 211 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 SP9P0CG40 484 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 NDUFV2P19404 249 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 CD40LGP29965 261 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 CDK16Q00536 496 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 FOLH1Q04609 750 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 ERV3-1Q14264 604 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 NFATC4Q14934 902 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 NRF1Q16656 503 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 SPDYCQ5MJ68 293 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 DDX59Q5T1V6 619 aaKnown RBP eCLIP7.08□□□□□ -1.28
SCN9A-202ENST00000409435 RPTNQ6XPR3 784 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 NUP54Q7Z3B4 507 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 DCUN1D3Q8IWE4 304 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 SLC43A3Q8NBI5 491 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 EPS8L1Q8TE68 723 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 OR6C1Q96RD1 312 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 KCND1Q9NSA2 647 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 ETNK2Q9NVF9 386 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 MFHAS1Q9Y4C4 1052 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 HS3ST3A1Q9Y663 406 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 NRAPQ86VF7 1730 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 ZNF726A6NNF4 738 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 KLRC4-KLRK1H3BQV0 150 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 UBDO15205 165 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 PAPSS1O43252 624 aaPredicted RBP7.08□□□□□ -1.28
SCN9A-202ENST00000409435 TGFB1I1O43294 461 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 CPNE3O75131 537 aaKnown RBP7.08□□□□□ -1.28
SCN9A-202ENST00000409435 RPL4P36578 427 aaKnown RBP7.08□□□□□ -1.28
SCN9A-202ENST00000409435 ETV3P41162 512 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 RPL35P42766 123 aaKnown RBP7.08□□□□□ -1.28
SCN9A-202ENST00000409435 TMEM115Q12893 351 aaPredicted RBP7.08□□□□□ -1.28
SCN9A-202ENST00000409435 GPALPP1Q8IXQ4 340 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 OR8D2Q9GZM6 311 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 CLEC1BQ9P126 229 aa7.08□□□□□ -1.28
SCN9A-202ENST00000409435 MAFKO60675 156 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 MYCLP1P12525 358 aaPredicted RBP7.07□□□□□ -1.28
SCN9A-202ENST00000409435 ANPEPP15144 967 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 SLC7A2P52569 658 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 PLA2G16P53816 162 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 SRYQ05066 204 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 AGKQ53H12 422 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 KLHL26Q53HC5 615 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 PRAMEF13Q5VWM6 474 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 FAM220AQ7Z4H9 259 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 IRF2BP1Q8IU81 584 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 TRAM1L1Q8N609 369 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 VANGL1Q8TAA9 524 aaPredicted RBP7.07□□□□□ -1.28
SCN9A-202ENST00000409435 TRIM2Q9C040 744 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 SEMA6AQ9H2E6 1030 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 KCNF1Q9H3M0 494 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 MID1IP1Q9NPA3 183 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 TUBG2Q9NRH3 451 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 TBCCD1Q9NVR7 557 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 TMEM248Q9NWD8 314 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 TPOP07202 933 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 ZNF28P17035 718 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 HRH2P25021 359 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 TRIM23P36406 574 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 CDK9P50750 372 aaKnown RBP7.07□□□□□ -1.28
SCN9A-202ENST00000409435 COTL1Q14019 142 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 CLCA4Q14CN2 919 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 SLC1A5Q15758 541 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 MARCH8Q5T0T0 291 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 SYPL2Q5VXT5 272 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 AAGABQ6PD74 315 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 UNQ6126/PRO20091Q6UXV3 157 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 SSX6Q7RTT6 188 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 CILP2Q8IUL8 1156 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 PRR7Q8TB68 274 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 SPPL2AQ8TCT8 520 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 ATG4AQ8WYN0 398 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 PPCDCQ96CD2 204 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 MBOAT7Q96N66 472 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 WRAP73Q9P2S5 460 aaPredicted RBP7.07□□□□□ -1.28
SCN9A-202ENST00000409435 LEF1Q9UJU2 399 aaPredicted RBP7.07□□□□□ -1.28
SCN9A-202ENST00000409435 MEMO1Q9Y316 297 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 PKD1L3Q7Z443 1732 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 AKAP11Q9UKA4 1901 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 IGKV6-21A0A0C4DH24 114 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 H3BQF6 201 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 IFNA6P05013 189 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 GKP32189 559 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 KCNJ1P48048 391 aa7.07□□□□□ -1.28
SCN9A-202ENST00000409435 PLK1P53350 603 aa7.07□□□□□ -1.28
Retrieved 100 of 20,778 RNA–protein pairs in 30.3 ms