RNA–Protein interactions for RNA: ENST00000395653.9

CLN3-207, Transcript of CLN3, battenin, humanhuman

TSL 5 BASIC

Gene CLN3, Length 1,430 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-207ENST00000395653 GEMIN8Q9NWZ8 242 aaKnown RBP20.66■□□□□ 0.9
CLN3-207ENST00000395653 COPG2Q9UBF2 871 aa20.66■□□□□ 0.9
CLN3-207ENST00000395653 TMCO1Q9UM00 188 aa20.66■□□□□ 0.9
CLN3-207ENST00000395653 CDC14CA4D256 554 aa20.65■□□□□ 0.9
CLN3-207ENST00000395653 CNOT3O75175 753 aaKnown RBP20.65■□□□□ 0.9
CLN3-207ENST00000395653 STATHP02808 62 aa20.65■□□□□ 0.9
CLN3-207ENST00000395653 TUBBP07437 444 aa20.65■□□□□ 0.9
CLN3-207ENST00000395653 FURINP09958 794 aa20.65■□□□□ 0.9
CLN3-207ENST00000395653 EPORP19235 508 aa20.65■□□□□ 0.9
CLN3-207ENST00000395653 SLBPQ14493 270 aaKnown RBP eCLIP20.65■□□□□ 0.9
CLN3-207ENST00000395653 PCBP2Q15366 365 aaKnown RBP eCLIP20.65■□□□□ 0.9
CLN3-207ENST00000395653 METTL2BQ6P1Q9 378 aaKnown RBP20.65■□□□□ 0.9
CLN3-207ENST00000395653 OR2Y1Q8NGV0 311 aa20.65■□□□□ 0.9
CLN3-207ENST00000395653 ADAMTS17Q8TE56 1095 aa20.65■□□□□ 0.9
CLN3-207ENST00000395653 COL26A1Q96A83 441 aa20.65■□□□□ 0.9
CLN3-207ENST00000395653 WBP1Q96G27 269 aa20.65■□□□□ 0.9
CLN3-207ENST00000395653 MRPL46Q9H2W6 279 aaKnown RBP20.65■□□□□ 0.9
CLN3-207ENST00000395653 CPSF2Q9P2I0 782 aaKnown RBP20.65■□□□□ 0.9
CLN3-207ENST00000395653 RAB21Q9UL25 225 aa20.65■□□□□ 0.9
CLN3-207ENST00000395653 POLHQ9Y253 713 aa20.65■□□□□ 0.9
CLN3-207ENST00000395653 TNPO3Q9Y5L0 923 aaKnown RBP20.65■□□□□ 0.9
CLN3-207ENST00000395653 MAU2Q9Y6X3 613 aa20.65■□□□□ 0.9
CLN3-207ENST00000395653 NDUFS4O43181 175 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 FOXS1O43638 330 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 ATXN8OSP0DMR3 200 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 FBLP22087 321 aaKnown RBP20.64■□□□□ 0.89
CLN3-207ENST00000395653 GSTM2P28161 218 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 FOLR3P41439 243 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 SLCO1A2P46721 670 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 DSG2Q14126 1118 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 E2F2Q14209 437 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 TBR1Q16650 682 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 XKR6Q5GH73 641 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 TMIGD1Q6UXZ0 262 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 KRT78Q8N1N4 520 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 TRPV3Q8NET8 790 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 TTLQ8NG68 377 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 NT5CQ8TCD5 201 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 THAP4Q8WY91 577 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 EXTL1Q92935 676 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 PTCD3Q96EY7 689 aaKnown RBP20.64■□□□□ 0.89
CLN3-207ENST00000395653 SEC16BQ96JE7 1060 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 MACROD1Q9BQ69 325 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 EFCAB11Q9BUY7 163 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 NT5DC2Q9H857 520 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 NXT1Q9UKK6 140 aaKnown RBP20.64■□□□□ 0.89
CLN3-207ENST00000395653 MRPS2Q9Y399 296 aaKnown RBP20.64■□□□□ 0.89
CLN3-207ENST00000395653 PTRH2Q9Y3E5 179 aaKnown RBP20.64■□□□□ 0.89
CLN3-207ENST00000395653 SLC22A7Q9Y694 548 aa20.64■□□□□ 0.89
CLN3-207ENST00000395653 PRAMEF4O60810 478 aa20.63■□□□□ 0.89
CLN3-207ENST00000395653 CDH16O75309 829 aa20.63■□□□□ 0.89
CLN3-207ENST00000395653 NSA2O95478 260 aaKnown RBP20.63■□□□□ 0.89
CLN3-207ENST00000395653 EPB42P16452 691 aa20.63■□□□□ 0.89
CLN3-207ENST00000395653 AVPR1BP47901 424 aa20.63■□□□□ 0.89
CLN3-207ENST00000395653 IRF8Q02556 426 aa20.63■□□□□ 0.89
CLN3-207ENST00000395653 RGS1Q08116 209 aa20.63■□□□□ 0.89
CLN3-207ENST00000395653 PCDH1Q08174 1060 aa20.63■□□□□ 0.89
CLN3-207ENST00000395653 RBBP5Q15291 538 aaKnown RBP20.63■□□□□ 0.89
CLN3-207ENST00000395653 TBCCQ15814 346 aa20.63■□□□□ 0.89
CLN3-207ENST00000395653 NKG7Q16617 165 aa20.63■□□□□ 0.89
CLN3-207ENST00000395653 FAM69BQ5VUD6 431 aa20.63■□□□□ 0.89
CLN3-207ENST00000395653 PRAMEF9Q5VWM5 478 aa20.63■□□□□ 0.89
CLN3-207ENST00000395653 BORAQ6PGQ7 559 aa20.63■□□□□ 0.89
CLN3-207ENST00000395653 KCT2Q8NC54 265 aa20.63■□□□□ 0.89
CLN3-207ENST00000395653 LSM14AQ8ND56 463 aaKnown RBP20.63■□□□□ 0.89
CLN3-207ENST00000395653 EPS8L3Q8TE67 593 aaKnown RBP20.63■□□□□ 0.89
CLN3-207ENST00000395653 MMABQ96EY8 250 aaPredicted RBP20.63■□□□□ 0.89
CLN3-207ENST00000395653 SPSB2Q99619 263 aa20.63■□□□□ 0.89
CLN3-207ENST00000395653 IGLV3-12A0A075B6K2 115 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 A0A0A6YYC8 382 aaPredicted RBP20.62■□□□□ 0.89
CLN3-207ENST00000395653 VSTM2BA6NLU5 285 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 H0YIG0 161 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 STX16-NPEPL1H3BU86 382 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 I3L1I5 382 aaPredicted RBP20.62■□□□□ 0.89
CLN3-207ENST00000395653 TK2O00142 265 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 STX16O14662 325 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 SMIM24O75264 130 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 CASP2P42575 452 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 CHIT1Q13231 466 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 LAPTM5Q13571 262 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 DOC2AQ14183 400 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 DEFB109BQ30KR1 87 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 PAGE2BQ5JRK9 111 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 PCSK4Q6UW60 755 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 TMEM151AQ8N4L1 468 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 MREGQ8N565 214 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 PTGR2Q8N8N7 351 aaPredicted RBP20.62■□□□□ 0.89
CLN3-207ENST00000395653 MOCOSQ96EN8 888 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 CTSFQ9UBX1 484 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 ZNF282Q9UDV7 671 aaPredicted RBP20.62■□□□□ 0.89
CLN3-207ENST00000395653 ANGPTL3Q9Y5C1 460 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 CACNA1GO43497 2377 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 ATMQ13315 3056 aa20.62■□□□□ 0.89
CLN3-207ENST00000395653 SMIM23A6NLE4 172 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 ATXN7O15265 892 aaPredicted RBP20.61■□□□□ 0.89
CLN3-207ENST00000395653 WFS1O76024 890 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 SERPIND1P05546 499 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 GSTA1P08263 222 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 PYGBP11216 843 aa20.61■□□□□ 0.89
CLN3-207ENST00000395653 KRT15P19012 456 aa20.61■□□□□ 0.89
Retrieved 100 of 20,778 RNA–protein pairs in 49.4 ms