RNA–Protein interactions for RNA: ENST00000394943.7

LIMA1-202, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,669 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-202ENST00000394943 MED27Q6P2C8 311 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 RAB11FIP2Q7L804 512 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 ASPGQ86U10 573 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 AMER3Q8N944 861 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 Q8N9G6 341 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-202ENST00000394943 PPFIBP2Q8ND30 876 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 OR4F6Q8NGB9 312 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 FAM111AQ96PZ2 611 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 C20orf27Q9GZN8 174 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 IPPKQ9H8X2 491 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 TMED5Q9Y3A6 229 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 SDK2Q58EX2 2172 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 VPS13AQ96RL7 3174 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 DMXL1Q9Y485 3027 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 CACNA1HO95180 2353 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 SLCO1B7G3V0H7 640 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 MANBAO00462 879 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 GALR3O60755 368 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-202ENST00000394943 SHOX2O60902 331 aaPredicted RBP6.68□□□□□ -1.34
LIMA1-202ENST00000394943 STAT5AP42229 794 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 ABCE1P61221 599 aaKnown RBP6.68□□□□□ -1.34
LIMA1-202ENST00000394943 YBX1P67809 324 aaKnown RBP6.68□□□□□ -1.34
LIMA1-202ENST00000394943 KRT33BQ14525 404 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 GRM7Q14831 915 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 DEPDC1Q5TB30 811 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 ABHD17CQ6PCB6 329 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 SUSD1Q6UWL2 747 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 TMIGD1Q6UXZ0 262 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 CHSY3Q70JA7 882 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 DGLUCYQ7Z3D6 616 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 SCUBE1Q8IWY4 988 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 SYTL1Q8IYJ3 562 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 OR2L5Q8NG80 312 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 PPM1MQ96MI6 270 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 NSUN5Q96P11 429 aaKnown RBP6.68□□□□□ -1.34
LIMA1-202ENST00000394943 SERPINI1Q99574 410 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 TBCDQ9BTW9 1192 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 GPR87Q9BY21 358 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 TUBB1Q9H4B7 451 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 FANCEQ9HB96 536 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 EML4Q9HC35 981 aaKnown RBP6.68□□□□□ -1.34
LIMA1-202ENST00000394943 THAP1Q9NVV9 213 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 TAS2R7Q9NYW3 318 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 KLK13Q9UKR3 277 aa6.68□□□□□ -1.34
LIMA1-202ENST00000394943 LRRC14BA6NHZ5 514 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 ZNF749O43361 778 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 CPNE3O75131 537 aaKnown RBP6.67□□□□□ -1.34
LIMA1-202ENST00000394943 SIX3O95343 332 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-202ENST00000394943 LIPCP11150 499 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 HGFP14210 728 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 PTX3P26022 381 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-202ENST00000394943 ALDH4A1P30038 563 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 RAE1P78406 368 aaKnown RBP6.67□□□□□ -1.34
LIMA1-202ENST00000394943 PDE7AQ13946 482 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 DSG2Q14126 1118 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 HERC3Q15034 1050 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 TMEM205Q6UW68 189 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 FAM92BQ6ZTR7 304 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 GPRIN3Q6ZVF9 776 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 ZNF761Q86XN6 746 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-202ENST00000394943 TBC1D19Q8N5T2 526 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 TEX9Q8N6V9 391 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 PLPP5Q8NEB5 264 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 OR52B6Q8NGF0 335 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 FAM136AQ96C01 138 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 CMTM7Q96FZ5 175 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 C17orf62Q9BQA9 187 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 NOL11Q9H8H0 719 aaKnown RBP6.67□□□□□ -1.34
LIMA1-202ENST00000394943 SATB2Q9UPW6 733 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 LOC105369274A0A096LPK9 316 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 LOC102723532A0A0G2JNH3 316 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 A0A1B0GX78 115 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 EFCAB7A8K855 629 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 HYAL3O43820 417 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-202ENST00000394943 NEFHP12036 1026 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 TYRP1P17643 537 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 CDH3P22223 829 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 GDF5P43026 501 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 GLRBP48167 497 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 CHIT1Q13231 466 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 TERF2Q15554 542 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 DCAF12Q5T6F0 453 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 FRG2Q64ET8 278 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 PDSS2Q86YH6 399 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 CLYBLQ8N0X4 340 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 OR4N4Q8N0Y3 316 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 ZNF655Q8N720 491 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-202ENST00000394943 ARMC2Q8NEN0 867 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 JPH3Q8WXH2 748 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-202ENST00000394943 ZNF317Q96PQ6 595 aaPredicted RBP6.67□□□□□ -1.34
LIMA1-202ENST00000394943 FRG2BQ96QU4 278 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 SERINC2Q96SA4 455 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 ATG10Q9H0Y0 220 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 LANCL2Q9NS86 450 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 FGF21Q9NSA1 209 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 C14orf105Q9NVL8 296 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 NTMQ9P121 344 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 VTI1BQ9UEU0 232 aa6.67□□□□□ -1.34
LIMA1-202ENST00000394943 RUVBL1Q9Y265 456 aaKnown RBP6.67□□□□□ -1.34
LIMA1-202ENST00000394943 TRBV23OR9-2A0A075B6M9 112 aa6.66□□□□□ -1.34
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms