RNA–Protein interactions for RNA: ENST00000378839.1

CCDC3-202, Transcript of coiled-coil domain containing 3, humanhuman

APPRIS ALT2 TSL 2 BASIC

Gene CCDC3, Length 3,180 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC3-202ENST00000378839 GTF2H3Q13889 308 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 SIM2Q14190 667 aaPredicted RBP12.88□□□□□ -0.35
CCDC3-202ENST00000378839 TTC23Q5W5X9 447 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 FAM180BQ6P0A1 224 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 PLA2G15Q8NCC3 412 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 BPIFB6Q8NFQ5 453 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 CIDECQ96AQ7 238 aaPredicted RBP12.88□□□□□ -0.35
CCDC3-202ENST00000378839 BRF2Q9HAW0 419 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 FAM120CQ9NX05 1096 aaKnown RBP12.88□□□□□ -0.35
CCDC3-202ENST00000378839 HCN2Q9UL51 889 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 FZD4Q9ULV1 537 aa12.88□□□□□ -0.35
CCDC3-202ENST00000378839 SLC16A6O15403 523 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 EPN2O95208 641 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 FGF19O95750 216 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 NTRK1P04629 796 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 SRPRAP08240 638 aaKnown RBP12.87□□□□□ -0.35
CCDC3-202ENST00000378839 PCMT1P22061 227 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 CD6P30203 668 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 MLLT10P55197 1068 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 SH3BGRP55822 239 aaPredicted RBP12.87□□□□□ -0.35
CCDC3-202ENST00000378839 NFE2L1Q14494 772 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 ANKDD1AQ495B1 522 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 OR2T5Q6IEZ7 315 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 CBLL1Q75N03 491 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 OR2T29Q8NH02 315 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 ZFP90Q8TF47 636 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 COQ8BQ96D53 544 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 C7orf34Q96L11 122 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 RAD9AQ99638 391 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 SORBS1Q9BX66 1292 aaKnown RBP12.87□□□□□ -0.35
CCDC3-202ENST00000378839 OR51B5Q9H339 312 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 RMI1Q9H9A7 625 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 LINC01553A4QN01 128 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 EVPLLA8MZ36 301 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 SLC1A7O00341 560 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 TLL1O43897 1013 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 PRMT3O60678 531 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 TGFB1P01137 390 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 ABCB1P08183 1280 aaPredicted RBP12.87□□□□□ -0.35
CCDC3-202ENST00000378839 C6P13671 934 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 TNFRSF1BP20333 461 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 PLA2G16P53816 162 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 KCNJ10P78508 379 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 GRSF1Q12849 480 aaKnown RBP eCLIP12.87□□□□□ -0.35
CCDC3-202ENST00000378839 CDK5R2Q13319 367 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 RBM48Q5RL73 367 aaKnown RBP12.87□□□□□ -0.35
CCDC3-202ENST00000378839 CPTPQ5TA50 214 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 KDM4DQ6B0I6 523 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 ERAP2Q6P179 960 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 VN1R5Q7Z5H4 357 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 C11orf96Q7Z7L8 435 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 ADGRD2Q7Z7M1 963 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 ZC3H7AQ8IWR0 971 aaKnown RBP12.87□□□□□ -0.35
CCDC3-202ENST00000378839 FAM9CQ8IZT9 166 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 ZNF555Q8NEP9 628 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 FKBP10Q96AY3 582 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 SAMD4AQ9UPU9 718 aaKnown RBP12.87□□□□□ -0.35
CCDC3-202ENST00000378839 PRAMEF25A6NGN4 478 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 MYO1GB0I1T2 1018 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 MAN1A2O60476 641 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 XYLBO75191 536 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 ZNF182P17025 639 aaPredicted RBP12.87□□□□□ -0.35
CCDC3-202ENST00000378839 NR4A1P22736 598 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 HBA1P69905 142 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 TAP2Q03519 686 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 SKIV2LQ15477 1246 aaKnown RBP12.87□□□□□ -0.35
CCDC3-202ENST00000378839 BROXQ5VW32 411 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 CRTC3Q6UUV7 619 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 TRAPPC5Q8IUR0 188 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 SYTL1Q8IYJ3 562 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 NRSN1Q8IZ57 195 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 CPA6Q8N4T0 437 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 ZNF420Q8TAQ5 688 aaPredicted RBP12.87□□□□□ -0.35
CCDC3-202ENST00000378839 HCAR2Q8TDS4 363 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 ATL1Q8WXF7 558 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 OTUB2Q96DC9 234 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 LRIG1Q96JA1 1093 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 GABARAPL1Q9H0R8 117 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 TMEM98Q9Y2Y6 226 aa12.87□□□□□ -0.35
CCDC3-202ENST00000378839 MRPS23Q9Y3D9 190 aaKnown RBP12.87□□□□□ -0.35
CCDC3-202ENST00000378839 A0A0J9YVX5 310 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 HEPACAM2A8MVW5 462 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 PTGES3LE9PB15 166 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 HOXC11O43248 304 aaPredicted RBP12.86□□□□□ -0.35
CCDC3-202ENST00000378839 INMTO95050 263 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 TBX6O95947 436 aaPredicted RBP12.86□□□□□ -0.35
CCDC3-202ENST00000378839 IGFBP5P24593 272 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 TIA1P31483 386 aaKnown RBP eCLIP12.86□□□□□ -0.35
CCDC3-202ENST00000378839 VASPP50552 380 aaPredicted RBP12.86□□□□□ -0.35
CCDC3-202ENST00000378839 SLBPQ14493 270 aaKnown RBP eCLIP12.86□□□□□ -0.35
CCDC3-202ENST00000378839 RGNQ15493 299 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 SMN1Q16637 294 aaKnown RBP12.86□□□□□ -0.35
CCDC3-202ENST00000378839 BCL7AQ4VC05 210 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 C1QTNF12Q5T7M4 302 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 CAMKMTQ7Z624 323 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 HIPK1Q86Z02 1210 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 TBC1D15Q8TC07 691 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 SGPP1Q9BX95 441 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 TM7SF3Q9NS93 570 aa12.86□□□□□ -0.35
CCDC3-202ENST00000378839 ACSL6Q9UKU0 697 aa12.86□□□□□ -0.35
Retrieved 100 of 20,778 RNA–protein pairs in 108.6 ms