RNA–Protein interactions for RNA: ENST00000373602.9

CCDC28B-201, Transcript of coiled-coil domain containing 28B, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CCDC28B, Length 1,089 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC28B-201ENST00000373602 JRKO75564 520 aa20.53■□□□□ 0.88
CCDC28B-201ENST00000373602 CBX6O95503 412 aa20.53■□□□□ 0.88
CCDC28B-201ENST00000373602 CYC1P08574 325 aa20.53■□□□□ 0.88
CCDC28B-201ENST00000373602 SLC35G6P0C7Q6 338 aa20.53■□□□□ 0.88
CCDC28B-201ENST00000373602 SOX11P35716 441 aa20.53■□□□□ 0.88
CCDC28B-201ENST00000373602 MEF2AQ02078 507 aaPredicted RBP20.53■□□□□ 0.88
CCDC28B-201ENST00000373602 CALCOCO2Q13137 446 aa20.53■□□□□ 0.88
CCDC28B-201ENST00000373602 LINC00696Q6ZRV3 163 aa20.53■□□□□ 0.88
CCDC28B-201ENST00000373602 MAATS1Q7Z4T9 603 aa20.53■□□□□ 0.88
CCDC28B-201ENST00000373602 SHISA5Q8N114 240 aa20.53■□□□□ 0.88
CCDC28B-201ENST00000373602 ZCCHC10Q8TBK6 192 aa20.53■□□□□ 0.88
CCDC28B-201ENST00000373602 SLC5A11Q8WWX8 675 aa20.53■□□□□ 0.88
CCDC28B-201ENST00000373602 PSMG3-AS1Q96PY0 264 aa20.53■□□□□ 0.88
CCDC28B-201ENST00000373602 VN1R1Q9GZP7 353 aa20.53■□□□□ 0.88
CCDC28B-201ENST00000373602 DPH5Q9H2P9 285 aa20.53■□□□□ 0.88
CCDC28B-201ENST00000373602 SMYD2Q9NRG4 433 aa20.53■□□□□ 0.88
CCDC28B-201ENST00000373602 NTNG1Q9Y2I2 539 aa20.53■□□□□ 0.88
CCDC28B-201ENST00000373602 CNTRLQ7Z7A1 2325 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 TRBC2A0A5B9 178 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 EIF3HO15372 352 aaKnown RBP eCLIP20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 RAD51CO43502 376 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 OR1F1O43749 312 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 AGFG2O95081 481 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 C8orf89P0DMQ9 161 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 TSFMP43897 325 aaKnown RBP20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 XCR1P46094 333 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 CDKL1Q00532 357 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 ILF2Q12905 390 aaKnown RBP20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 PWP1Q13610 501 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 ZNF460Q14592 562 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 ZNF169Q14929 603 aaPredicted RBP20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 NR6A1Q15406 480 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 EIF2S3LQ2VIR3 472 aaKnown RBP20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 CATSPEREQ5SY80 951 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 B3GNTL1Q67FW5 361 aaPredicted RBP20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 RIPOR1Q6ZS17 1223 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 PDSS2Q86YH6 399 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 CEP97Q8IW35 865 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 BRIX1Q8TDN6 353 aaKnown RBP20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 PYROXD1Q8WU10 500 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 METTL21AQ8WXB1 218 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 NEIL2Q969S2 332 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 VPS39Q96JC1 886 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 CNDP1Q96KN2 507 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 HCN3Q9P1Z3 774 aa20.52■□□□□ 0.88
CCDC28B-201ENST00000373602 BLACEA4D250 179 aa20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 NPEPPSL1A6NEC2 478 aa20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 SSTR1P30872 391 aa20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 CSHL1Q14406 222 aa20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 TLR1Q15399 786 aa20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 CAPN12Q6ZSI9 719 aa20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 AFAP1L2Q8N4X5 818 aa20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 TBC1D19Q8N5T2 526 aa20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 ANKRD49Q8WVL7 239 aa20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 MOCOSQ96EN8 888 aa20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 IMMP1LQ96LU5 166 aa20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 CYTH2Q99418 400 aa20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 TUBB6Q9BUF5 446 aa20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 SPNS1Q9H2V7 528 aa20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 POPDC3Q9HBV1 291 aa20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 SAYSD1Q9NPB0 183 aa20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 GRHL1Q9NZI5 618 aa20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 PTGFRNQ9P2B2 879 aa20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 NAALAD2Q9Y3Q0 740 aa20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 IGF2BP2Q9Y6M1 599 aaKnown RBP eCLIP20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 USP9XQ93008 2570 aaPredicted RBP20.51■□□□□ 0.87
CCDC28B-201ENST00000373602 SCN3AQ9NY46 2000 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 NDUFS4O43181 175 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 SEMA7AO75326 666 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 RDH16O75452 317 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 PIAS1O75925 651 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 WISP3O95389 354 aaPredicted RBP20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 CELA2AP08217 269 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 ICAM2P13598 275 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 CASQ1P31415 396 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 SCTRP47872 440 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 AP2B1P63010 937 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 C2orf54Q08AI8 447 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 HERC3Q15034 1050 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 MINDY4Q4G0A6 757 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 CYS1Q717R9 158 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 THOC6Q86W42 341 aaKnown RBP20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 ZNF740Q8NDX6 193 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 CATSPER1Q8NEC5 780 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 TSNARE1Q96NA8 513 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 PELI2Q9HAT8 420 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 GPAMQ9HCL2 828 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 AGPAT4Q9NRZ5 378 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 C19orf25Q9UFG5 118 aaPredicted RBP20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 ZFP69BQ9UJL9 534 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 SLC22A14Q9Y267 594 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 DYRK1BQ9Y463 629 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 OARD1Q9Y530 152 aa20.5■□□□□ 0.87
CCDC28B-201ENST00000373602 CXorf49A8MYA2 514 aaPredicted RBP20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 WFS1O76024 890 aa20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 GP1BBP13224 206 aa20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 IL10P22301 178 aa20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 AHRP35869 848 aa20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 ETF1P62495 437 aaKnown RBP20.49■□□□□ 0.87
CCDC28B-201ENST00000373602 REEP5Q00765 189 aa20.49■□□□□ 0.87
Retrieved 100 of 20,778 RNA–protein pairs in 32 ms