RNA–Protein interactions for RNA: ENST00000354098.7

SHMT1-203, Transcript of serine hydroxymethyltransferase 1, humanhuman

TSL 1 (best) BASIC

Gene SHMT1, Length 1,656 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT1-203ENST00000354098 VN1R5Q7Z5H4 357 aa21.13■□□□□ 0.97
SHMT1-203ENST00000354098 SYVN1Q86TM6 617 aa21.13■□□□□ 0.97
SHMT1-203ENST00000354098 NUDCD3Q8IVD9 361 aa21.13■□□□□ 0.97
SHMT1-203ENST00000354098 DTWD1Q8N5C7 304 aa21.13■□□□□ 0.97
SHMT1-203ENST00000354098 KCT2Q8NC54 265 aa21.13■□□□□ 0.97
SHMT1-203ENST00000354098 CREB3L4Q8TEY5 395 aa21.13■□□□□ 0.97
SHMT1-203ENST00000354098 ZNF578Q96N58 590 aaPredicted RBP21.13■□□□□ 0.97
SHMT1-203ENST00000354098 PAIP2Q9BPZ3 127 aaKnown RBP21.13■□□□□ 0.97
SHMT1-203ENST00000354098 PITHD1Q9GZP4 211 aaPredicted RBP21.13■□□□□ 0.97
SHMT1-203ENST00000354098 DHCR7Q9UBM7 475 aaKnown RBP21.13■□□□□ 0.97
SHMT1-203ENST00000354098 FRYQ5TBA9 3013 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 HYKKA2RU49 373 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 C1QTNF9BB2RNN3 333 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 NDUFS4O43181 175 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 OR4F21O95013 312 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 C1QTNF9P0C862 333 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 HNF4AP41235 474 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 LCP2Q13094 533 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 MED27Q6P2C8 311 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 LAS2Q8IYD9 372 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 ARHGEF39Q8N4T4 335 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 OR7G3Q8NG95 312 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 CLIP3Q96DZ5 547 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 ZNF382Q96SR6 550 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 MRPS2Q9Y399 296 aaKnown RBP21.12■□□□□ 0.97
SHMT1-203ENST00000354098 TMEM184BQ9Y519 407 aaPredicted RBP21.12■□□□□ 0.97
SHMT1-203ENST00000354098 DYNC1I1O14576 645 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 MLYCDO95822 493 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 DLGAP3O95886 979 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 PCNAP12004 261 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 ZRSR2Q15696 482 aaKnown RBP21.12■□□□□ 0.97
SHMT1-203ENST00000354098 HHATQ5VTY9 493 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 CES4AQ5XG92 561 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 TTLL10Q6ZVT0 673 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 RNF175Q8N4F7 328 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 TTC29Q8NA56 475 aaPredicted RBP21.12■□□□□ 0.97
SHMT1-203ENST00000354098 CAMKVQ8NCB2 501 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 GALNT6Q8NCL4 622 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 C10orf90Q96M02 699 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 NDC1Q9BTX1 674 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 SHCBP1LQ9BZQ2 653 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 SLC7A5P2Q9GIP4 190 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 AKIRIN1Q9H9L7 192 aaPredicted RBP21.12■□□□□ 0.97
SHMT1-203ENST00000354098 CUTCQ9NTM9 273 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 NKIRAS1Q9NYS0 192 aa21.12■□□□□ 0.97
SHMT1-203ENST00000354098 FFAR3O14843 346 aa21.11■□□□□ 0.97
SHMT1-203ENST00000354098 BIRC5O15392 142 aa21.11■□□□□ 0.97
SHMT1-203ENST00000354098 GPR42O15529 346 aa21.11■□□□□ 0.97
SHMT1-203ENST00000354098 CPNE3O75131 537 aaKnown RBP21.11■□□□□ 0.97
SHMT1-203ENST00000354098 TBX6O95947 436 aaPredicted RBP21.11■□□□□ 0.97
SHMT1-203ENST00000354098 CAPNS1P04632 268 aa21.11■□□□□ 0.97
SHMT1-203ENST00000354098 ASPHQ12797 758 aa21.11■□□□□ 0.97
SHMT1-203ENST00000354098 HYAL2Q12891 473 aa21.11■□□□□ 0.97
SHMT1-203ENST00000354098 GPS2Q13227 327 aa21.11■□□□□ 0.97
SHMT1-203ENST00000354098 C1orf189Q5VU69 101 aa21.11■□□□□ 0.97
SHMT1-203ENST00000354098 ATG14Q6ZNE5 492 aa21.11■□□□□ 0.97
SHMT1-203ENST00000354098 GPRIN3Q6ZVF9 776 aa21.11■□□□□ 0.97
SHMT1-203ENST00000354098 TRPV3Q8NET8 790 aa21.11■□□□□ 0.97
SHMT1-203ENST00000354098 OR6Y1Q8NGX8 325 aa21.11■□□□□ 0.97
SHMT1-203ENST00000354098 AGAP11Q8TF27 550 aa21.11■□□□□ 0.97
SHMT1-203ENST00000354098 RHBGQ9H310 441 aa21.11■□□□□ 0.97
SHMT1-203ENST00000354098 CCDC86Q9H6F5 360 aaKnown RBP21.11■□□□□ 0.97
SHMT1-203ENST00000354098 MID1IP1Q9NPA3 183 aa21.11■□□□□ 0.97
SHMT1-203ENST00000354098 SDK2Q58EX2 2172 aa21.11■□□□□ 0.97
SHMT1-203ENST00000354098 ANKDD1BA6NHY2 528 aa21.1■□□□□ 0.97
SHMT1-203ENST00000354098 H0YIV9 168 aa21.1■□□□□ 0.97
SHMT1-203ENST00000354098 ATP8B1O43520 1251 aa21.1■□□□□ 0.97
SHMT1-203ENST00000354098 TLX3O43711 291 aaPredicted RBP21.1■□□□□ 0.97
SHMT1-203ENST00000354098 SLC35G6P0C7Q6 338 aa21.1■□□□□ 0.97
SHMT1-203ENST00000354098 ALAS2P22557 587 aa21.1■□□□□ 0.97
SHMT1-203ENST00000354098 ARRB2P32121 409 aa21.1■□□□□ 0.97
SHMT1-203ENST00000354098 NEK2P51955 445 aa21.1■□□□□ 0.97
SHMT1-203ENST00000354098 PWP1Q13610 501 aa21.1■□□□□ 0.97
SHMT1-203ENST00000354098 RHBDD2Q6NTF9 364 aa21.1■□□□□ 0.97
SHMT1-203ENST00000354098 CDYL2Q8N8U2 506 aa21.1■□□□□ 0.97
SHMT1-203ENST00000354098 NT5CQ8TCD5 201 aa21.1■□□□□ 0.97
SHMT1-203ENST00000354098 CCT6BQ92526 530 aa21.1■□□□□ 0.97
SHMT1-203ENST00000354098 UBE2E3Q969T4 207 aa21.1■□□□□ 0.97
SHMT1-203ENST00000354098 MTFMTQ96DP5 389 aaKnown RBP21.1■□□□□ 0.97
SHMT1-203ENST00000354098 CNDP1Q96KN2 507 aa21.1■□□□□ 0.97
SHMT1-203ENST00000354098 AICDAQ9GZX7 198 aa21.1■□□□□ 0.97
SHMT1-203ENST00000354098 DRC3Q9H069 523 aa21.1■□□□□ 0.97
SHMT1-203ENST00000354098 KLHL31Q9H511 634 aa21.1■□□□□ 0.97
SHMT1-203ENST00000354098 TNFRSF12AQ9NP84 129 aa21.1■□□□□ 0.97
SHMT1-203ENST00000354098 ACSL6Q9UKU0 697 aa21.1■□□□□ 0.97
SHMT1-203ENST00000354098 PCDHGA11Q9Y5H2 935 aa21.1■□□□□ 0.97
SHMT1-203ENST00000354098 STMND1H3BQB6 276 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 TXNDC9O14530 226 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 CHRNGP07510 517 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 ATXN8OSP0DMR3 200 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 RORAP35398 523 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 NAA20P61599 178 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 DDX39BQ13838 428 aaKnown RBP21.09■□□□□ 0.97
SHMT1-203ENST00000354098 TGIF1Q15583 401 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 CHI3L2Q15782 390 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 FAM214AQ32MH5 1076 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 GGTA1PQ4G0N0 100 aa21.09■□□□□ 0.97
SHMT1-203ENST00000354098 TMEM214Q6NUQ4 689 aaKnown RBP21.09■□□□□ 0.97
SHMT1-203ENST00000354098 METTL27Q8N6F8 245 aaPredicted RBP21.09■□□□□ 0.97
SHMT1-203ENST00000354098 TTLQ8NG68 377 aa21.09■□□□□ 0.97
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms