RNA–Protein interactions for RNA: ENST00000341423.9

HMGB1-203, Transcript of high mobility group box 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene HMGB1, Length 5,485 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
HMGB1-203ENST00000341423 ENDOVQ8N8Q3 282 aaKnown RBP8.11□□□□□ -1.11
HMGB1-203ENST00000341423 ATG16L2Q8NAA4 619 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 SSC4DQ8WTU2 575 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 SCAMP4Q969E2 229 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 ELMO3Q96BJ8 720 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 ENKD1Q9H0I2 346 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 MTG2Q9H4K7 406 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 PPCSQ9HAB8 311 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 CHMP1AQ9HD42 196 aaPredicted RBP8.11□□□□□ -1.11
HMGB1-203ENST00000341423 SPATA7Q9P0W8 599 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 CAPN11Q9UMQ6 739 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 FAM237AA0A1B0GTK4 181 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 A0A1B0GTQ1 180 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 C17orf113A0A1B0GUU1 675 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 CFAP73A6NFT4 308 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 M0QZ24 198 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 BTN3A3O00478 584 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 HOXB9P17482 250 aaPredicted RBP8.11□□□□□ -1.11
HMGB1-203ENST00000341423 ALOX12P18054 663 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 RPS3P23396 243 aaKnown RBP eCLIP8.11□□□□□ -1.119e-18■■□□□ 12.1
HMGB1-203ENST00000341423 RAB25P57735 213 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 RGS8P57771 180 aaPredicted RBP8.11□□□□□ -1.11
HMGB1-203ENST00000341423 DEFB134Q4QY38 66 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 FAM180BQ6P0A1 224 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 LRRC8BQ6P9F7 803 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 PAPD4Q6PIY7 484 aaKnown RBP8.11□□□□□ -1.11
HMGB1-203ENST00000341423 UGT2A3Q6UWM9 527 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 C3orf62Q6ZUJ4 267 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 NINJ1Q92982 152 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 CEP19Q96LK0 163 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 CNTNAP3BQ96NU0 1288 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 CNTNAP3Q9BZ76 1288 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 POLR3BQ9NW08 1133 aaPredicted RBP8.11□□□□□ -1.11
HMGB1-203ENST00000341423 PPP1R37O75864 691 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 SEC24DO94855 1032 aaPredicted RBP8.11□□□□□ -1.11
HMGB1-203ENST00000341423 CRYAAP02489 173 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 EIF4EP06730 217 aaKnown RBP8.11□□□□□ -1.11
HMGB1-203ENST00000341423 CD79AP11912 226 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 BMP5P22003 454 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 SOX6P35712 828 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 CHIT1Q13231 466 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 RCN1Q15293 331 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 TMEM196Q5HYL7 178 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 BEND6Q5SZJ8 279 aaPredicted RBP8.11□□□□□ -1.11
HMGB1-203ENST00000341423 NKAIN2Q5VXU1 208 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 SEL1L3Q68CR1 1132 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 SH3YL1Q96HL8 342 aaPredicted RBP8.11□□□□□ -1.11
HMGB1-203ENST00000341423 TRIB1Q96RU8 372 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 ST6GALNAC4Q9H4F1 302 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 MID1IP1Q9NPA3 183 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 CHST7Q9NS84 486 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 ZNF223Q9UK11 482 aaPredicted RBP8.11□□□□□ -1.11
HMGB1-203ENST00000341423 CACNA1HO95180 2353 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 SSU72P8A0A1W2PR75 194 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 SLC35F4A4IF30 521 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 YY2O15391 372 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 TRIM3O75382 744 aaPredicted RBP8.11□□□□□ -1.11
HMGB1-203ENST00000341423 GRK5P34947 590 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 GP5P40197 560 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 XCR1P46094 333 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 MTTPP55157 894 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 ETF1P62495 437 aaKnown RBP8.11□□□□□ -1.11
HMGB1-203ENST00000341423 ZBTB17Q13105 803 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 IL11RAQ14626 422 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 RASA2Q15283 850 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 EIPR1Q53HC9 387 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 TRAPPC6BQ86SZ2 158 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 ZC3HC1Q86WB0 502 aaKnown RBP8.11□□□□□ -1.11
HMGB1-203ENST00000341423 TBC1D21Q8IYX1 336 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 OR1J4Q8NGS1 313 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 OR8S1Q8NH09 359 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 PROKR1Q8TCW9 393 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 TRPC4APQ8TEL6 797 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 RAB8BQ92930 207 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 THAP11Q96EK4 314 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 ANKRD27Q96NW4 1050 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 LHPPQ9H008 270 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 SHARPINQ9H0F6 387 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 INTS9Q9NV88 658 aaKnown RBP8.11□□□□□ -1.11
HMGB1-203ENST00000341423 MSRB2Q9Y3D2 182 aa8.11□□□□□ -1.11
HMGB1-203ENST00000341423 IGLV3-22A0A075B6J6 115 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 RNF103-CHMP3A0A140T963 221 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 C21orf140B9A014 251 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 TRIM24O15164 1050 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 PRODHO43272 600 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 ALDOBP05062 364 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 IL7RP16871 459 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 SP140Q13342 867 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 ZNF766Q5HY98 468 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 SPATA21Q7Z572 469 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 C12orf56Q8IXR9 622 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 OR4C6Q8NH72 309 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 ITCHQ96J02 903 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 PPP1R36Q96LQ0 422 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 PPP3R2Q96LZ3 170 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 SMOQ99835 787 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 FAM118BQ9BPY3 351 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 TIMM29Q9BSF4 260 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 G6PC3Q9BUM1 346 aa8.1□□□□□ -1.11
HMGB1-203ENST00000341423 RAB1BQ9H0U4 201 aa8.1□□□□□ -1.11
Retrieved 100 of 20,778 RNA–protein pairs in 32.2 ms