RNA–Protein interactions for RNA: ENST00000301897.5

CCDC88B-201, Transcript of coiled-coil domain containing 88B, humanhuman

TSL 1 (best) BASIC

Gene CCDC88B, Length 870 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC88B-201ENST00000301897 PPFIBP2Q8ND30 876 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 AGAP11Q8TF27 550 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 CA5BP1Q8WTZ4 195 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 PRAP1Q96NZ9 151 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 OLFM1Q99784 485 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 ENKD1Q9H0I2 346 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 CCDC68Q9H2F9 335 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 CCDC177Q9NQR7 707 aaPredicted RBP13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 COQ3Q9NZJ6 369 aa13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 INTS1Q8N201 2190 aaKnown RBP13.92□□□□□ -0.18
CCDC88B-201ENST00000301897 NAV3Q8IVL0 2385 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 MAGEB17A8MXT2 336 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 C19orf84I3L1E1 186 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 GFYI3L273 518 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 EIF3FO00303 357 aaPredicted RBP13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 KRT38O76015 456 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 WISP2O76076 250 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 ZNF24P17028 368 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 IL1RNP18510 177 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 MGAT1P26572 445 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 GRK3P35626 688 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 CLCN7P51798 805 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 SARNPP82979 210 aaKnown RBP13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 TLE4Q04727 773 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 KCNJ11Q14654 390 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 CCNG2Q16589 344 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 SFT2D3Q587I9 215 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 SPINK14Q6IE38 97 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 SLC25A25Q6KCM7 469 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 NIPAL1Q6NVV3 410 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 NEPROQ6NW34 567 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 GSTA5Q7RTV2 222 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 GALNTL5Q7Z4T8 443 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 VN1R4Q7Z5H5 301 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 PRUNE1Q86TP1 453 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 PLD3Q8IV08 490 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 POGLUT1Q8NBL1 392 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 ACBD4Q8NC06 268 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 PLPP5Q8NEB5 264 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 KCNJ9Q92806 393 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 BAG1Q99933 345 aaPredicted RBP13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 TRIM51Q9BSJ1 452 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 TSPAN10Q9H1Z9 355 aaPredicted RBP13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 ABCF3Q9NUQ8 709 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 SYBUQ9NX95 663 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 HCN3Q9P1Z3 774 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 LRFN1Q9P244 771 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 ZKSCAN5Q9Y2L8 839 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 SLC22A7Q9Y694 548 aa13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 MAP1AP78559 2803 aaPredicted RBP13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 NIPBLQ6KC79 2804 aaeCLIP13.91□□□□□ -0.18
CCDC88B-201ENST00000301897 GOLGA8KD6RF30 607 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 GOLGA8TH3BQL2 631 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 NDC80O14777 642 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 SLC25A12O75746 678 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 NEURL1O76050 574 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 SLC35G6P0C7Q6 338 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 ZSCAN5DPP0CG00 497 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 CD1EP15812 388 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 TPSB2P20231 275 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 MPP1Q00013 466 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 MEF2AQ02078 507 aaPredicted RBP13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 USP10Q14694 798 aaKnown RBP13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 HERC3Q15034 1050 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 RPS6KA1Q15418 735 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 TPSAB1Q15661 275 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 MAPKAPK3Q16644 382 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 LRRC8EQ6NSJ5 796 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 CES3Q6UWW8 571 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 MEX3BQ6ZN04 569 aaKnown RBP13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 PRSS41Q7RTY9 318 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 PNPLA5Q7Z6Z6 429 aaPredicted RBP13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 C17orf64Q86WR6 236 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 DOLPP1Q86YN1 238 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 LRRC56Q8IYG6 542 aaPredicted RBP13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 PRELID2Q8N945 189 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 MAIP1Q8WWC4 291 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 TMEM125Q96AQ2 219 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 DMRTA2Q96SC8 542 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 TREX2Q9BQ50 279 aaPredicted RBP13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 HES7Q9BYE0 225 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 ANKRD10Q9NXR5 420 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 SAMD15Q9P1V8 674 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 GALPQ9UBC7 116 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 PPT2Q9UMR5 302 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 COMMD10Q9Y6G5 202 aa13.9□□□□□ -0.18
CCDC88B-201ENST00000301897 CTAGE9A4FU28 777 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 FOXO6A8MYZ6 492 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 SGK494L7N484 410 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 NME2P1O60361 137 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 NME2P22392 152 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 JAK1P23458 1154 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 CCND1P24385 295 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 IMPA1P29218 277 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 OR4D2P58180 307 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 SLC26A5P58743 744 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 CSNK1G2P78368 415 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 RHAGQ02094 409 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 CDSNQ15517 529 aa13.89□□□□□ -0.19
CCDC88B-201ENST00000301897 CENPUQ71F23 418 aa13.89□□□□□ -0.19
Retrieved 100 of 20,778 RNA–protein pairs in 25.5 ms