RNA–Protein interactions for RNA: ENST00000291074.9

VPS53-201, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 1 (best) BASIC

Gene VPS53, Length 2,656 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-201ENST00000291074 ORC6Q9Y5N6 252 aa19.32■□□□□ 0.68
VPS53-201ENST00000291074 MUC22E2RYF6 1773 aaPredicted RBP19.32■□□□□ 0.68
VPS53-201ENST00000291074 BCKDKO14874 412 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 HPCAL1P37235 193 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 RAD23AP54725 363 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 MC1RQ01726 317 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 PCDH1Q08174 1060 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 GAB4Q2WGN9 574 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 ERICH5Q6P6B1 374 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 RTL10Q7L3V2 364 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 ZNF740Q8NDX6 193 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 BPIFB6Q8NFQ5 453 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 ADRB3P13945 408 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 ZNF8P17098 575 aaPredicted RBP19.31■□□□□ 0.68
VPS53-201ENST00000291074 VASPP50552 380 aaPredicted RBP19.31■□□□□ 0.68
VPS53-201ENST00000291074 EMP3P54852 163 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 SKIV2LQ15477 1246 aaKnown RBP19.31■□□□□ 0.68
VPS53-201ENST00000291074 HNRNPA1L2Q32P51 320 aaKnown RBP19.31■□□□□ 0.68
VPS53-201ENST00000291074 CBLL1Q75N03 491 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 WDR48Q8TAF3 677 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 OR8D1Q8WZ84 308 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 SMG7Q92540 1137 aaKnown RBP19.31■□□□□ 0.68
VPS53-201ENST00000291074 DTNBP1Q96EV8 351 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 CHST8Q9H2A9 424 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 TM9SF3Q9HD45 589 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 RPS6KA6Q9UK32 745 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 DYRK1BQ9Y463 629 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 PLXND1Q9Y4D7 1925 aa19.31■□□□□ 0.68
VPS53-201ENST00000291074 PIPSLA2A3N6 862 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 PTGES3LE9PB15 166 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 SLC1A7O00341 560 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 POP7O75817 140 aaKnown RBP19.3■□□□□ 0.68
VPS53-201ENST00000291074 TAP2Q03519 686 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 ANGPTL8Q6UXH0 198 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 FAM83HQ6ZRV2 1179 aaPredicted RBP19.3■□□□□ 0.68
VPS53-201ENST00000291074 EIF3MQ7L2H7 374 aaKnown RBP19.3■□□□□ 0.68
VPS53-201ENST00000291074 COMMD6Q7Z4G1 85 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 ZBTB46Q86UZ6 589 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 PGBD3Q8N328 593 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 OR4A15Q8NGL6 344 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 ZFP90Q8TF47 636 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 ITFG2Q969R8 447 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 EPHX3Q9H6B9 360 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 BTNL2Q9UIR0 455 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 TMEM98Q9Y2Y6 226 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 DOCK9Q9BZ29 2069 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 C2orf16Q68DN1 1984 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 HEPACAM2A8MVW5 462 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 XPNPEP2O43895 674 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 JUNBP17275 347 aaPredicted RBP19.3■□□□□ 0.68
VPS53-201ENST00000291074 NUP107P57740 925 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 IL5RAQ01344 420 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 DCTN2Q13561 401 aaKnown RBP19.3■□□□□ 0.68
VPS53-201ENST00000291074 E2F2Q14209 437 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 HORMAD1Q86X24 394 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 CACUL1Q86Y37 369 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 NAGSQ8N159 534 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 PIK3C3Q8NEB9 887 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 OR9A1PQ8NGU1 263 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 STARD8Q92502 1023 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 FAM129BQ96TA1 746 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 TUBA1CQ9BQE3 449 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 DMRT3Q9NQL9 472 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 RAPGEFL1Q9UHV5 662 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 CDH7Q9ULB5 785 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 TRANK1O15050 2925 aa19.3■□□□□ 0.68
VPS53-201ENST00000291074 SLC16A6O15403 523 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 SEC14L2O76054 403 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 ZNF234Q14588 700 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 RGNQ15493 299 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 FAM78AQ5JUQ0 283 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 COX20Q5RI15 118 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 ARHGAP22Q7Z5H3 698 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 ADGRD2Q7Z7M1 963 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 MMAAQ8IVH4 418 aaKnown RBP19.29■□□□□ 0.68
VPS53-201ENST00000291074 ZNF784Q8NCA9 323 aaPredicted RBP19.29■□□□□ 0.68
VPS53-201ENST00000291074 PLA2G15Q8NCC3 412 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 CIDECQ96AQ7 238 aaPredicted RBP19.29■□□□□ 0.68
VPS53-201ENST00000291074 COQ8BQ96D53 544 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 METTL2AQ96IZ6 378 aaKnown RBP19.29■□□□□ 0.68
VPS53-201ENST00000291074 SGPP1Q9BX95 441 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 ZCCHC2Q9C0B9 1178 aaKnown RBP19.29■□□□□ 0.68
VPS53-201ENST00000291074 PDP1Q9P0J1 537 aaPredicted RBP19.29■□□□□ 0.68
VPS53-201ENST00000291074 SAMHD1Q9Y3Z3 626 aaKnown RBP19.29■□□□□ 0.68
VPS53-201ENST00000291074 NUMA1Q14980 2115 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 PAPLNO95428 1278 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 C1GALT1C1LP0DN25 315 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 EPHA2P29317 976 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 MAPK9P45984 424 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 ENTPD1P49961 510 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 CAMKMTQ7Z624 323 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 LRRC56Q8IYG6 542 aaPredicted RBP19.29■□□□□ 0.68
VPS53-201ENST00000291074 FBXO15Q8NCQ5 510 aaPredicted RBP19.29■□□□□ 0.68
VPS53-201ENST00000291074 DGCR6LQ9BY27 220 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 GABARAPL1Q9H0R8 117 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 DEC1Q9P2X7 70 aa19.29■□□□□ 0.68
VPS53-201ENST00000291074 EDDM13A0A1B0GTR0 161 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 GSTM2P28161 218 aa19.28■□□□□ 0.68
VPS53-201ENST00000291074 CLK3P49761 638 aaKnown RBP19.28■□□□□ 0.68
VPS53-201ENST00000291074 HBA1P69905 142 aa19.28■□□□□ 0.68
Retrieved 100 of 20,778 RNA–protein pairs in 26.1 ms