RNA–Protein interactions for RNA: ENST00000263398.10

CD44-201, Transcript of CD44 molecule (Indian blood group), humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene CD44, Length 4,589 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-201ENST00000263398 RIPOR3Q96MK2 946 aa10.43□□□□□ -0.74
CD44-201ENST00000263398 ZNF778Q96MU6 729 aa10.43□□□□□ -0.74
CD44-201ENST00000263398 SLC38A3Q99624 504 aa10.43□□□□□ -0.74
CD44-201ENST00000263398 PLEKHA1Q9HB21 404 aa10.43□□□□□ -0.74
CD44-201ENST00000263398 C14orf105Q9NVL8 296 aa10.43□□□□□ -0.74
CD44-201ENST00000263398 COPS7AQ9UBW8 275 aa10.43□□□□□ -0.74
CD44-201ENST00000263398 UTS2RQ9UKP6 389 aa10.43□□□□□ -0.74
CD44-201ENST00000263398 LTBP3Q9NS15 1303 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 PRRC2BQ5JSZ5 2229 aaKnown RBP10.42□□□□□ -0.74
CD44-201ENST00000263398 IGKV6D-21A0A0A0MT36 114 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 FAM170BA6NMN3 283 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 ARL6IP5O75915 188 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 CHRM1P11229 460 aaPredicted RBP10.42□□□□□ -0.74
CD44-201ENST00000263398 ATF6P18850 670 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 XKR4Q5GH76 650 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 NUP188Q5SRE5 1749 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 NOXRED1Q6NXP6 359 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 PGBD2Q6P3X8 592 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 CAMKVQ8NCB2 501 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 C1orf216Q8TAB5 229 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 ARMC5Q96C12 935 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 TUBA1CQ9BQE3 449 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 SEC14L4Q9UDX3 406 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 A0A096LPI6 279 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 TMEM150CB9EJG8 249 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 XPNPEP2O43895 674 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 ITGB1P05556 798 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 TACSTD2P09758 323 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 ZNF3P17036 446 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 IL12BP29460 328 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 MASP1P48740 699 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 CDH11P55287 796 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 VBP1P61758 197 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 TSPAN5P62079 268 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 TLR1Q15399 786 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 ARL9Q6T311 187 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 NUP54Q7Z3B4 507 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 DCUN1D3Q8IWE4 304 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 ZNF366Q8N895 744 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 FAM46DQ8NEK8 389 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 OR56A1Q8NGH5 318 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 OR9A1PQ8NGU1 263 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 ABCG4Q9H172 646 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 ADAMTS10Q9H324 1103 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 SRRDQ9UH36 339 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 TBC1D24Q9ULP9 559 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 MGAT4BQ9UQ53 548 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 INSL5Q9Y5Q6 135 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 FKBP7Q9Y680 259 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 MYH6P13533 1939 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 ELOA3DA6NLF2 546 aaPredicted RBP10.42□□□□□ -0.74
CD44-201ENST00000263398 LSM1O15116 133 aaKnown RBP10.42□□□□□ -0.74
CD44-201ENST00000263398 ENTPD6O75354 484 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 ITGA10O75578 1167 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 C6orf47O95873 294 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 RENP00797 406 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 ADH5P11766 374 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 AHCYP23526 432 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 ARHGDIBP52566 201 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 ARF5P84085 180 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 LAPTM4AQ15012 233 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 ELOA3BQ3SY89 546 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 SHQ1Q6PI26 577 aaKnown RBP10.42□□□□□ -0.74
CD44-201ENST00000263398 BLOC1S3Q6QNY0 202 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 QSOX2Q6ZRP7 698 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 SYVN1Q86TM6 617 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 SLC22A16Q86VW1 577 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 ZNF676Q8N7Q3 588 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 ATP6V1C2Q8NEY4 427 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 ELOA3Q8NG57 546 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 ERMAPQ96PL5 475 aaPredicted RBP10.42□□□□□ -0.74
CD44-201ENST00000263398 RMI1Q9H9A7 625 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 ZNF224Q9NZL3 707 aa10.42□□□□□ -0.74
CD44-201ENST00000263398 RHPN2P1A8MT19 583 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 TLX3O43711 291 aaPredicted RBP10.41□□□□□ -0.74
CD44-201ENST00000263398 OR1I1O60431 355 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 MTRF1O75570 445 aaKnown RBP10.41□□□□□ -0.74
CD44-201ENST00000263398 RASAL1O95294 804 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 PGDP52209 483 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 VMACQ2NL98 169 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 COQ5Q5HYK3 327 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 KCT2Q8NC54 265 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 FATE1Q969F0 183 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 PRR11Q96HE9 360 aaPredicted RBP10.41□□□□□ -0.74
CD44-201ENST00000263398 SLC30A2Q9BRI3 323 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 MMP27Q9H306 513 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 RC3H2Q9HBD1 1191 aaKnown RBP10.41□□□□□ -0.74
CD44-201ENST00000263398 TRIM36Q9NQ86 728 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 PDLIM7Q9NR12 457 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 PHF24Q9UPV7 400 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 CNTRLQ7Z7A1 2325 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 EDDM13A0A1B0GTR0 161 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 OR14I1A6ND48 311 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 NDUFS4O43181 175 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 DENRO43583 198 aaKnown RBP10.41□□□□□ -0.74
CD44-201ENST00000263398 HPRP00739 348 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 YES1P07947 543 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 KCNA5P22460 613 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 KDELR2P33947 212 aa10.41□□□□□ -0.74
CD44-201ENST00000263398 RFC2P35250 354 aa10.41□□□□□ -0.74
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms