RNA–Protein interactions for RNA: ENST00000261058.2

CCDC54-201, Transcript of coiled-coil domain containing 54, humanhuman

APPRIS P1 BASIC

Gene CCDC54, Length 1,444 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CCDC54-201ENST00000261058 CCDC60Q8IWA6 550 aaPredicted RBP3.91□□□□□ -1.78
CCDC54-201ENST00000261058 CCDC170Q8IYT3 715 aa3.91□□□□□ -1.78
CCDC54-201ENST00000261058 TBC1D21Q8IYX1 336 aa3.91□□□□□ -1.78
CCDC54-201ENST00000261058 LSMEM2Q8N112 164 aa3.91□□□□□ -1.78
CCDC54-201ENST00000261058 NCOA7Q8NI08 942 aa3.91□□□□□ -1.78
CCDC54-201ENST00000261058 GATAD1Q8WUU5 269 aa3.91□□□□□ -1.78
CCDC54-201ENST00000261058 APOBEC4Q8WW27 367 aaKnown RBP3.91□□□□□ -1.78
CCDC54-201ENST00000261058 PIK3R3Q92569 461 aa3.91□□□□□ -1.78
CCDC54-201ENST00000261058 PTP4A1Q93096 173 aa3.91□□□□□ -1.78
CCDC54-201ENST00000261058 TSACCQ96A04 125 aaPredicted RBP3.91□□□□□ -1.78
CCDC54-201ENST00000261058 PYCR2Q96C36 320 aa3.91□□□□□ -1.78
CCDC54-201ENST00000261058 FBXO17Q96EF6 278 aa3.91□□□□□ -1.78
CCDC54-201ENST00000261058 PGM2Q96G03 612 aa3.91□□□□□ -1.78
CCDC54-201ENST00000261058 CCDC114Q96M63 670 aa3.91□□□□□ -1.78
CCDC54-201ENST00000261058 CDCA3Q99618 268 aaPredicted RBP3.91□□□□□ -1.78
CCDC54-201ENST00000261058 FSD1Q9BTV5 496 aa3.91□□□□□ -1.78
CCDC54-201ENST00000261058 NT5C3AQ9H0P0 336 aa3.91□□□□□ -1.78
CCDC54-201ENST00000261058 RAVER2Q9HCJ3 691 aaKnown RBP3.91□□□□□ -1.78
CCDC54-201ENST00000261058 PHPT1Q9NRX4 125 aaPredicted RBP3.91□□□□□ -1.78
CCDC54-201ENST00000261058 PKD2L2Q9NZM6 624 aa3.91□□□□□ -1.78
CCDC54-201ENST00000261058 OR6C2Q9NZP2 312 aa3.91□□□□□ -1.78
CCDC54-201ENST00000261058 LEF1Q9UJU2 399 aaPredicted RBP3.91□□□□□ -1.78
CCDC54-201ENST00000261058 PPP2R2CQ9Y2T4 447 aa3.91□□□□□ -1.78
CCDC54-201ENST00000261058 KLK4Q9Y5K2 254 aa3.91□□□□□ -1.78
CCDC54-201ENST00000261058 CNTNAP2Q9UHC6 1331 aa3.91□□□□□ -1.78
CCDC54-201ENST00000261058 EIF4G1Q04637 1599 aaKnown RBP3.9□□□□□ -1.78
CCDC54-201ENST00000261058 UNC13AQ9UPW8 1703 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 A0A087WW49 117 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 YDJCA8MPS7 323 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 HHLA1C9JL84 531 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 STX6O43752 255 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 SEC22BO75396 215 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 ZFAND5O76080 213 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 SLU7O95391 586 aaKnown RBP3.9□□□□□ -1.78
CCDC54-201ENST00000261058 SEC24AO95486 1093 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 F3P13726 295 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 IL10P22301 178 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 LHCGRP22888 699 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 MAPK3P27361 379 aaPredicted RBP3.9□□□□□ -1.78
CCDC54-201ENST00000261058 DUTP33316 252 aaKnown RBP3.9□□□□□ -1.78
CCDC54-201ENST00000261058 SH3BGRP55822 239 aaPredicted RBP3.9□□□□□ -1.78
CCDC54-201ENST00000261058 AKAP17AQ02040 695 aaKnown RBP3.9□□□□□ -1.78
CCDC54-201ENST00000261058 YWHAHQ04917 246 aaPredicted RBP3.9□□□□□ -1.78
CCDC54-201ENST00000261058 SRSF9Q13242 221 aaKnown RBP eCLIP3.9□□□□□ -1.78
CCDC54-201ENST00000261058 WSCD2Q2TBF2 565 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 NHSL2Q5HYW2 709 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 LCN1P1Q5VSP4 162 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 ARHGEF16Q5VV41 709 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 RCOR2Q8IZ40 523 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 NHLRC2Q8NBF2 726 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 ZNF540Q8NDQ6 660 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 OR10G8Q8NGN5 311 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 FIBINQ8TAL6 211 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 KLHL5Q96PQ7 755 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 PARK7Q99497 189 aaKnown RBP3.9□□□□□ -1.78
CCDC54-201ENST00000261058 MINDY3Q9H8M7 445 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 MAN2C1Q9NTJ4 1040 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 DDX43Q9NXZ2 648 aaKnown RBP3.9□□□□□ -1.78
CCDC54-201ENST00000261058 RABL2AQ9UBK7 228 aaPredicted RBP3.9□□□□□ -1.78
CCDC54-201ENST00000261058 ITGA11Q9UKX5 1188 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 LIPT1Q9Y234 373 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 PYGO1Q9Y3Y4 419 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 KIF3AQ9Y496 699 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 R4GN57 208 aa3.9□□□□□ -1.78
CCDC54-201ENST00000261058 MTMR11A4FU01 709 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 ZBTB14O43829 449 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 SOCS5O75159 536 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 PALMO75781 387 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 ATP1B1P05026 303 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 LEPRP48357 1165 aaKnown RBP3.89□□□□□ -1.79
CCDC54-201ENST00000261058 CRIP2P52943 208 aaPredicted RBP3.89□□□□□ -1.79
CCDC54-201ENST00000261058 ITGA9Q13797 1035 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 FFAR4Q5NUL3 377 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 ADAMTSL4-AS1Q5T5F5 129 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 ZNF770Q6IQ21 691 aaPredicted RBP3.89□□□□□ -1.79
CCDC54-201ENST00000261058 ARHGAP11AQ6P4F7 1023 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 SHQ1Q6PI26 577 aaKnown RBP3.89□□□□□ -1.79
CCDC54-201ENST00000261058 PRSS55Q6UWB4 352 aaPredicted RBP3.89□□□□□ -1.79
CCDC54-201ENST00000261058 OTOAQ7RTW8 1153 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 PPP1R42Q7Z4L9 355 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 DZIP1Q86YF9 867 aaKnown RBP3.89□□□□□ -1.79
CCDC54-201ENST00000261058 LACC1Q8IV20 430 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 C4orf19Q8IY42 314 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 OR7A2PQ8NGA2 310 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 BRSK1Q8TDC3 778 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 ZNRF4Q8WWF5 429 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 SUSD6Q92537 303 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 TEKT1Q969V4 418 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 EXOC4Q96A65 974 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 C16orf45Q96MC5 204 aaPredicted RBP3.89□□□□□ -1.79
CCDC54-201ENST00000261058 ZNF396Q96N95 335 aaPredicted RBP3.89□□□□□ -1.79
CCDC54-201ENST00000261058 ATP6V0BQ99437 205 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 LPAR4Q99677 370 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 ASCL2Q99929 193 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 ACAT2Q9BWD1 397 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 CDK19Q9BWU1 502 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 SNX25Q9H3E2 840 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 COPS7BQ9H9Q2 264 aaPredicted RBP3.89□□□□□ -1.79
CCDC54-201ENST00000261058 TUFT1Q9NNX1 390 aa3.89□□□□□ -1.79
CCDC54-201ENST00000261058 SLCO1C1Q9NYB5 712 aa3.89□□□□□ -1.79
Retrieved 100 of 20,778 RNA–protein pairs in 58.1 ms