RNA–Protein interactions for RNA: ENST00000636876.1

CLN6-216, Transcript of CLN6, transmembrane ER protein, humanhuman

TSL 5

Gene CLN6, Length 655 nt, Biotype nonsense mediated decay, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN6-216ENST00000636876 TRAF3Q13114 568 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 LAPTM5Q13571 262 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 LARP7Q4G0J3 582 aaKnown RBP eCLIP15.3■□□□□ 0.04
CLN6-216ENST00000636876 PAGE2BQ5JRK9 111 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 DCAF12Q5T6F0 453 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 LIPJQ5W064 366 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 IGF2-ASQ6U949 168 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 FRMD7Q6ZUT3 714 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 ZFHX4Q86UP3 3567 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 PPP1R3BQ86XI6 285 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 NUDCD3Q8IVD9 361 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 OR4N4Q8N0Y3 316 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 L3MBTL4Q8NA19 623 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 MFSD9Q8NBP5 474 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 OR52B6Q8NGF0 335 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 TRPC4APQ8TEL6 797 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 USP7Q93009 1102 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 PMEPA1Q969W9 287 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 NXPE2Q96DL1 559 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 CTRCQ99895 268 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 ZPBPQ9BS86 351 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 B3GNT4Q9C0J1 378 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 NT5DC2Q9H857 520 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 MLXIPLQ9NP71 852 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 ENAMQ9NRM1 1142 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 STK38LQ9Y2H1 464 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 PCDHGA3Q9Y5H0 932 aa15.3■□□□□ 0.04
CLN6-216ENST00000636876 C9orf172C9J069 976 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 PPP6CO00743 305 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 OR2B3O76000 313 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 DXOO77932 396 aaKnown RBP15.29■□□□□ 0.04
CLN6-216ENST00000636876 CLDN9O95484 217 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 RBMS1P29558 406 aaKnown RBP15.29■□□□□ 0.04
CLN6-216ENST00000636876 AHRP35869 848 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 ARL1P40616 181 aaPredicted RBP15.29■□□□□ 0.04
CLN6-216ENST00000636876 HNF4AP41235 474 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 RBBP5Q15291 538 aaKnown RBP15.29■□□□□ 0.04
CLN6-216ENST00000636876 HIST2H2ACQ16777 129 aaPredicted RBP15.29■□□□□ 0.04
CLN6-216ENST00000636876 TCTE1Q5JU00 501 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 TMEM164Q5U3C3 297 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 HIST2H2AA3Q6FI13 130 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 GRHL2Q6ISB3 625 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 TMIGD1Q6UXZ0 262 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 VN1R4Q7Z5H5 301 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 MYLK4Q86YV6 388 aaPredicted RBP15.29■□□□□ 0.04
CLN6-216ENST00000636876 GPR135Q8IZ08 494 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 MGARPQ8TDB4 240 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 RERGQ96A58 199 aaPredicted RBP15.29■□□□□ 0.04
CLN6-216ENST00000636876 SLC46A1Q96NT5 459 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 TEFMQ96QE5 360 aaKnown RBP15.29■□□□□ 0.04
CLN6-216ENST00000636876 ZNF382Q96SR6 550 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 ASPSCR1Q9BZE9 553 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 SPRTNQ9H040 489 aaPredicted RBP15.29■□□□□ 0.04
CLN6-216ENST00000636876 RNF11Q9Y3C5 154 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 B3GALT1Q9Y5Z6 326 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 AP1M2Q9Y6Q5 423 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 AHCTF1Q8WYP5 2266 aa15.29■□□□□ 0.04
CLN6-216ENST00000636876 A0A1B0GTL3 188 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 WDR91A4D1P6 747 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 NVLO15381 856 aaKnown RBP15.28■□□□□ 0.04
CLN6-216ENST00000636876 EIF2S1P05198 315 aaKnown RBP15.28■□□□□ 0.04
CLN6-216ENST00000636876 CCR10P46092 362 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 PKNOX1P55347 436 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 ERVPABLB-1P60509 514 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 PPP2R2AP63151 447 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 PRTGQ2VWP7 1150 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 HSP90B2PQ58FF3 399 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 WASHC2DQ5SRD0 308 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 PWWP2BQ6NUJ5 590 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 LETMD1Q6P1Q0 360 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 MED27Q6P2C8 311 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 ZCCHC23Q6ZST2 131 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 GPRIN3Q6ZVF9 776 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 MILR1Q7Z6M3 343 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP15.28■□□□□ 0.04
CLN6-216ENST00000636876 LSMEM2Q8N112 164 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 CSNK1A1LQ8N752 337 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 ANKRD53Q8N9V6 530 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 TTLQ8NG68 377 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 OR4F6Q8NGB9 312 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 OR6Y1Q8NGX8 325 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 UBE2E3Q969T4 207 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 CDK15Q96Q40 435 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 PAIP2Q9BPZ3 127 aaKnown RBP15.28■□□□□ 0.04
CLN6-216ENST00000636876 TRMOQ9BU70 441 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 DRC3Q9H069 523 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 MED4Q9NPJ6 270 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 ASCL3Q9NQ33 180 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 IRAK4Q9NWZ3 460 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 ZFP69BQ9UJL9 534 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 ZNF490Q9ULM2 529 aaPredicted RBP15.28■□□□□ 0.04
CLN6-216ENST00000636876 PCDHGA7Q9Y5G6 932 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 AK5Q9Y6K8 562 aa15.28■□□□□ 0.04
CLN6-216ENST00000636876 ZFYVE26Q68DK2 2539 aa15.27■□□□□ 0.04
CLN6-216ENST00000636876 SEC16AO15027 2179 aa15.27■□□□□ 0.04
CLN6-216ENST00000636876 FITM1A5D6W6 292 aa15.27■□□□□ 0.04
CLN6-216ENST00000636876 CDRT15L2A8MXV6 281 aa15.27■□□□□ 0.04
CLN6-216ENST00000636876 TXNDC9O14530 226 aa15.27■□□□□ 0.04
CLN6-216ENST00000636876 ZSCAN9O15535 394 aaPredicted RBP15.27■□□□□ 0.04
CLN6-216ENST00000636876 P2RX6O15547 441 aa15.27■□□□□ 0.04
Retrieved 100 of 20,778 RNA–protein pairs in 24.3 ms