RNA–Protein interactions for RNA: ENST00000635861.1

CLN3-241, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 1,404 nt, Biotype nonsense mediated decay, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-241ENST00000635861 JRKO75564 520 aa17.45■□□□□ 0.38
CLN3-241ENST00000635861 C8GP07360 202 aa17.45■□□□□ 0.38
CLN3-241ENST00000635861 RGS4P49798 205 aa17.45■□□□□ 0.38
CLN3-241ENST00000635861 TDGF1P3P51864 188 aa17.45■□□□□ 0.38
CLN3-241ENST00000635861 TICAM1Q8IUC6 712 aa17.45■□□□□ 0.38
CLN3-241ENST00000635861 CPNE9Q8IYJ1 553 aa17.45■□□□□ 0.38
CLN3-241ENST00000635861 SIRT6Q8N6T7 355 aa17.45■□□□□ 0.38
CLN3-241ENST00000635861 NAT8LQ8N9F0 302 aa17.45■□□□□ 0.38
CLN3-241ENST00000635861 SERBP1Q8NC51 408 aaKnown RBP eCLIP17.45■□□□□ 0.38
CLN3-241ENST00000635861 CAMKVQ8NCB2 501 aa17.45■□□□□ 0.38
CLN3-241ENST00000635861 SUN3Q8TAQ9 357 aa17.45■□□□□ 0.38
CLN3-241ENST00000635861 SIGLEC10Q96LC7 697 aa17.45■□□□□ 0.38
CLN3-241ENST00000635861 IMMP1LQ96LU5 166 aa17.45■□□□□ 0.38
CLN3-241ENST00000635861 PRAP1Q96NZ9 151 aa17.45■□□□□ 0.38
CLN3-241ENST00000635861 AARSD1Q9BTE6 412 aaKnown RBP17.45■□□□□ 0.38
CLN3-241ENST00000635861 SLC16A5O15375 505 aa17.44■□□□□ 0.38
CLN3-241ENST00000635861 CRYABP02511 175 aaKnown RBP17.44■□□□□ 0.38
CLN3-241ENST00000635861 TUBB4AP04350 444 aa17.44■□□□□ 0.38
CLN3-241ENST00000635861 COL8A1P27658 744 aa17.44■□□□□ 0.38
CLN3-241ENST00000635861 FNTAP49354 379 aa17.44■□□□□ 0.38
CLN3-241ENST00000635861 TBPL1P62380 186 aa17.44■□□□□ 0.38
CLN3-241ENST00000635861 ABHD17BQ5VST6 288 aa17.44■□□□□ 0.38
CLN3-241ENST00000635861 PALM2Q8IXS6 379 aa17.44■□□□□ 0.38
CLN3-241ENST00000635861 PPIL6Q8IXY8 311 aa17.44■□□□□ 0.38
CLN3-241ENST00000635861 RELTQ969Z4 430 aa17.44■□□□□ 0.38
CLN3-241ENST00000635861 TAS2R13Q9NYV9 303 aa17.44■□□□□ 0.38
CLN3-241ENST00000635861 TRMT6Q9UJA5 497 aaKnown RBP17.44■□□□□ 0.38
CLN3-241ENST00000635861 MAD1L1Q9Y6D9 718 aa17.44■□□□□ 0.38
CLN3-241ENST00000635861 APCP25054 2843 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 OR5H15A6NDH6 313 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 ENO4A6NNW6 628 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 GOLGA8MH3BSY2 632 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 PGRMC1O00264 195 aaKnown RBP17.43■□□□□ 0.38
CLN3-241ENST00000635861 FFAR3O14843 346 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 GPR42O15529 346 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 HAUS5O94927 633 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 TTC4O95801 387 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 ITGAMP11215 1152 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 PGAM1P18669 254 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 IL10P22301 178 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 GRK3P35626 688 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 AGTR2P50052 363 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 SYT16Q17RD7 645 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 ZNF800Q2TB10 664 aaPredicted RBP eCLIP17.43■□□□□ 0.38
CLN3-241ENST00000635861 PLAG1Q6DJT9 500 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 FAAH2Q6GMR7 532 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 TMEM214Q6NUQ4 689 aaKnown RBP17.43■□□□□ 0.38
CLN3-241ENST00000635861 HIBCHQ6NVY1 386 aaPredicted RBP17.43■□□□□ 0.38
CLN3-241ENST00000635861 PIWIL4Q7Z3Z4 852 aaKnown RBP17.43■□□□□ 0.38
CLN3-241ENST00000635861 VN1R4Q7Z5H5 301 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 TM4SF19Q96DZ7 209 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 MAGEB10Q96LZ2 347 aaPredicted RBP17.43■□□□□ 0.38
CLN3-241ENST00000635861 NAT9Q9BTE0 207 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 VN1R1Q9GZP7 353 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP17.43■□□□□ 0.38
CLN3-241ENST00000635861 PARVBQ9HBI1 364 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 ABCF3Q9NUQ8 709 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 ABI3Q9P2A4 366 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 PCDHGB6Q9Y5F9 930 aa17.43■□□□□ 0.38
CLN3-241ENST00000635861 GOLGA6L10A0A0M3HER8 536 aa17.42■□□□□ 0.38
CLN3-241ENST00000635861 CDK2AP1O14519 115 aa17.42■□□□□ 0.38
CLN3-241ENST00000635861 ZSCAN12O43309 604 aa17.42■□□□□ 0.38
CLN3-241ENST00000635861 BCL6P41182 706 aa17.42■□□□□ 0.38
CLN3-241ENST00000635861 HSP90AA5PQ58FG0 334 aa17.42■□□□□ 0.38
CLN3-241ENST00000635861 NIPAL1Q6NVV3 410 aa17.42■□□□□ 0.38
CLN3-241ENST00000635861 KIAA0408Q6ZU52 694 aa17.42■□□□□ 0.38
CLN3-241ENST00000635861 CPEB2Q7Z5Q1 589 aaKnown RBP17.42■□□□□ 0.38
CLN3-241ENST00000635861 C17orf64Q86WR6 236 aa17.42■□□□□ 0.38
CLN3-241ENST00000635861 PLD3Q8IV08 490 aa17.42■□□□□ 0.38
CLN3-241ENST00000635861 MYO1HQ8N1T3 1032 aa17.42■□□□□ 0.38
CLN3-241ENST00000635861 C2CD4AQ8NCU7 369 aaPredicted RBP17.42■□□□□ 0.38
CLN3-241ENST00000635861 OR9A4Q8NGU2 314 aa17.42■□□□□ 0.38
CLN3-241ENST00000635861 OR51Q1Q8NH59 317 aa17.42■□□□□ 0.38
CLN3-241ENST00000635861 TAAR6Q96RI8 345 aa17.42■□□□□ 0.38
CLN3-241ENST00000635861 CYTH2Q99418 400 aa17.42■□□□□ 0.38
CLN3-241ENST00000635861 ANKHQ9HCJ1 492 aa17.42■□□□□ 0.38
CLN3-241ENST00000635861 PLA2G3Q9NZ20 509 aa17.42■□□□□ 0.38
CLN3-241ENST00000635861 ENTPD4Q9Y227 616 aa17.42■□□□□ 0.38
CLN3-241ENST00000635861 PCNX1Q96RV3 2341 aa17.42■□□□□ 0.38
CLN3-241ENST00000635861 KIF2AO00139 706 aaPredicted RBP17.41■□□□□ 0.38
CLN3-241ENST00000635861 PRAMEF2O60811 474 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 RASAL1O95294 804 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 WDPCPO95876 746 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 HIST1H2AGP0C0S8 130 aaPredicted RBP17.41■□□□□ 0.38
CLN3-241ENST00000635861 SLC35G6P0C7Q6 338 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 HIST1H2ADP20671 130 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 CSNK1G2P78368 415 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 MPP1Q00013 466 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 MAT1AQ00266 395 aaKnown RBP17.41■□□□□ 0.38
CLN3-241ENST00000635861 H3F3CQ6NXT2 135 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 LCTLQ6UWM7 567 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 GALNT7Q86SF2 657 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 AGGF1Q8N302 714 aaeCLIP17.41■□□□□ 0.38
CLN3-241ENST00000635861 ACTRT1Q8TDG2 376 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 HIST1H2AHQ96KK5 128 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 ZNF354BQ96LW1 612 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 HIST1H2AJQ99878 128 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 HAUS8Q9BT25 410 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 H2AFJQ9BTM1 129 aa17.41■□□□□ 0.38
CLN3-241ENST00000635861 SARGQ9BW04 601 aa17.41■□□□□ 0.38
Retrieved 100 of 20,778 RNA–protein pairs in 68.1 ms