RNA–Protein interactions for RNA: ENST00000620219.4

CPSF1-213, Transcript of cleavage and polyadenylation specific factor 1, humanhuman

APPRIS P1 TSL 1 (best) BASIC

Gene CPSF1, Length 4,462 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CPSF1-213ENST00000620219 HRASLS2Q9NWW9 162 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 APOBEC3BQ9UH17 382 aaKnown RBP15.15■□□□□ 0.02
CPSF1-213ENST00000620219 ENTPD4Q9Y227 616 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 OR6C74A6NCV1 312 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 IL9P15248 144 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 DDX5P17844 614 aaKnown RBP15.15■□□□□ 0.02
CPSF1-213ENST00000620219 RAB28P51157 221 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 BLKP51451 505 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 TAS2R38P59533 333 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 TAGAPQ8N103 731 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 ZNF614Q8N883 585 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 PROKR1Q8TCW9 393 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 ASB9Q96DX5 294 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 PCDHB11Q9Y5F2 797 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 LDLRP01130 860 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 CCT8P50990 548 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 DPTQ07507 201 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 RGS1Q08116 209 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 SPIDRQ14159 915 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 TRIM40Q6P9F5 258 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 CEP68Q76N32 757 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 TICAM1Q8IUC6 712 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 OR1E3Q8WZA6 343 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 STARD8Q92502 1023 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 NLNQ9BYT8 704 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 FBRSQ9HAH7 460 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 PREBQ9HCU5 417 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 MCM8Q9UJA3 840 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 MMP17Q9ULZ9 603 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 FAM32AQ9Y421 112 aaKnown RBP15.15■□□□□ 0.02
CPSF1-213ENST00000620219 CHD9Q3L8U1 2897 aa15.15■□□□□ 0.02
CPSF1-213ENST00000620219 ZNF860A6NHJ4 632 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 GFYI3L273 518 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 PSIP1O75475 530 aaKnown RBP15.14■□□□□ 0.01
CPSF1-213ENST00000620219 SRP54P61011 504 aaKnown RBP15.14■□□□□ 0.01
CPSF1-213ENST00000620219 C6orf52Q5T4I8 152 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 NEK10Q6ZWH5 1172 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 OR13H1Q8NG92 308 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 OR52E1Q8NGJ3 308 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 GSDMCQ9BYG8 508 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 SPAG17Q6Q759 2223 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 IGLV3-16A0A075B6K0 115 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 PDLIM1O00151 329 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 ADAM23O75077 832 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 GAB4Q2WGN9 574 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 UNC5DQ6UXZ4 953 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 CATSPER1Q8NEC5 780 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 PATE1Q8WXA2 126 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 CLIP3Q96DZ5 547 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 CNOT6Q9ULM6 557 aaKnown RBP15.14■□□□□ 0.01
CPSF1-213ENST00000620219 HEBP2Q9Y5Z4 205 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 TSPAN11A1L157 253 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 ELOVL7A1L3X0 281 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 C8orf89P0DMQ9 161 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 GSSP48637 474 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 BNIP2Q12982 314 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 R3HCC1LQ7Z5L2 792 aaKnown RBP15.14■□□□□ 0.01
CPSF1-213ENST00000620219 C11orf74Q86VG3 221 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 AMIGO1Q86WK6 493 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 TBC1D21Q8IYX1 336 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 MAP10Q9P2G4 905 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 VPS4AQ9UN37 437 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 SPACA6W5XKT8 324 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 BPTFQ12830 3046 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 PLXNA4Q9HCM2 1894 aa15.14■□□□□ 0.01
CPSF1-213ENST00000620219 BCAS2O75934 225 aaPredicted RBP15.13■□□□□ 0.01
CPSF1-213ENST00000620219 B3GALT4O96024 378 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 PTX3P26022 381 aaPredicted RBP15.13■□□□□ 0.01
CPSF1-213ENST00000620219 PWP1Q13610 501 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 ZNF547Q8IVP9 402 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 CLECL1Q8IZS7 167 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 ZDHHC5Q9C0B5 715 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 IL21RQ9HBE5 538 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 DYTNA2CJ06 578 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 SMNDC1O75940 238 aaKnown RBP eCLIP15.13■□□□□ 0.012e-8■■■□□ 17.5
CPSF1-213ENST00000620219 RSL1D1O76021 490 aaKnown RBP15.13■□□□□ 0.01
CPSF1-213ENST00000620219 ANXA6P08133 673 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 SLC6A2P23975 617 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 HSD17B2P37059 387 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 UAP1L1Q3KQV9 507 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 ZIK1Q3SY52 487 aaPredicted RBP15.13■□□□□ 0.01
CPSF1-213ENST00000620219 SWT1Q5T5J6 900 aaKnown RBP15.13■□□□□ 0.01
CPSF1-213ENST00000620219 HSPA12BQ96MM6 686 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 CMTM6Q9NX76 183 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 WDR37Q9Y2I8 494 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 CXorf51AA0A1B0GTR3 108 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 MYOCOSA0A1B0GUC4 107 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 ARPC2O15144 300 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 CFIP05156 583 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 GABRG2P18507 467 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 SDC1P18827 310 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 IL12AP29459 219 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 ATP4BP51164 291 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 MC1RQ01726 317 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 KIAA2013Q8IYS2 634 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 MAGEE2Q8TD90 523 aaPredicted RBP15.13■□□□□ 0.01
CPSF1-213ENST00000620219 FAIM2Q9BWQ8 316 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 C17orf113A0A1B0GUU1 675 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 SLC35G6P0C7Q6 338 aa15.13■□□□□ 0.01
CPSF1-213ENST00000620219 SRSF11Q05519 484 aaKnown RBP15.13■□□□□ 0.01
Retrieved 100 of 20,778 RNA–protein pairs in 63.4 ms