RNA–Protein interactions for RNA: ENST00000619445.1

UPF3B-204, Transcript of UPF3B, regulator of nonsense mediated mRNA decay, humanhuman

TSL 5 BASIC

Gene UPF3B, Length 1,385 nt, Biotype protein coding.

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF3B-204ENST00000619445 HIST1H2AHQ96KK5 128 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 MAGEB10Q96LZ2 347 aaPredicted RBP11.29□□□□□ -0.6
UPF3B-204ENST00000619445 PRAP1Q96NZ9 151 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 HIST1H2AJQ99878 128 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 HAUS8Q9BT25 410 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 H2AFJQ9BTM1 129 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 TRIM54Q9BYV2 358 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.29□□□□□ -0.6
UPF3B-204ENST00000619445 PARVBQ9HBI1 364 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 ANKHQ9HCJ1 492 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 CORO1CQ9ULV4 474 aaPredicted RBP11.29□□□□□ -0.6
UPF3B-204ENST00000619445 OSGIN2Q9Y236 505 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 MED16Q9Y2X0 877 aa11.29□□□□□ -0.6
UPF3B-204ENST00000619445 ENO4A6NNW6 628 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 GOLGA8MH3BSY2 632 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 CES2O00748 559 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 JRKO75564 520 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 CLDN1O95832 211 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 DCTP40126 519 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 TERF1P54274 439 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 AP1S2P56377 157 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 TBPL1P62380 186 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 EEF1A2Q05639 463 aaKnown RBP11.28□□□□□ -0.6
UPF3B-204ENST00000619445 RBPJQ06330 500 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 PCOLCEQ15113 449 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 PPP1R7Q15435 360 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 EXT1Q16394 746 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 HSP90AA5PQ58FG0 334 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 PLAG1Q6DJT9 500 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 LURAP1LQ8IV03 231 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 CPNE9Q8IYJ1 553 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 NAT8LQ8N9F0 302 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 C2CD4AQ8NCU7 369 aaPredicted RBP11.28□□□□□ -0.6
UPF3B-204ENST00000619445 PPFIBP2Q8ND30 876 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 ACTRT1Q8TDG2 376 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 ATL1Q8WXF7 558 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 SIGLEC10Q96LC7 697 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 IMMP1LQ96LU5 166 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 ZNF354BQ96LW1 612 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 OR1F2PQ96R84 312 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 SLC30A3Q99726 388 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 STOX2Q9P2F5 926 aaPredicted RBP11.28□□□□□ -0.6
UPF3B-204ENST00000619445 SUCOQ9UBS9 1254 aaKnown RBP11.28□□□□□ -0.6
UPF3B-204ENST00000619445 NEU2Q9Y3R4 380 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 PCDHGB6Q9Y5F9 930 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 SLC22A7Q9Y694 548 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 OR5H15A6NDH6 313 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 PRAMEF2O60811 474 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 HAUS5O94927 633 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 RASAL1O95294 804 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 BCL6P41182 706 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 CCZ1BP86790 482 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 CCZ1P86791 482 aaPredicted RBP11.28□□□□□ -0.6
UPF3B-204ENST00000619445 ILF2Q12905 390 aaKnown RBP11.28□□□□□ -0.6
UPF3B-204ENST00000619445 CRYMQ14894 314 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 HERC3Q15034 1050 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 ZRSR2Q15696 482 aaKnown RBP11.28□□□□□ -0.6
UPF3B-204ENST00000619445 MINDY4Q4G0A6 757 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 SPANXN3Q5MJ09 141 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 MFSD4BQ5TF39 518 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 ZNF324BQ6AW86 544 aaPredicted RBP11.28□□□□□ -0.6
UPF3B-204ENST00000619445 CAPN13Q6MZZ7 669 aaPredicted RBP11.28□□□□□ -0.6
UPF3B-204ENST00000619445 TMEM214Q6NUQ4 689 aaKnown RBP11.28□□□□□ -0.6
UPF3B-204ENST00000619445 AGTRAPQ6RW13 159 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 LCTLQ6UWM7 567 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 PIWIL4Q7Z3Z4 852 aaKnown RBP11.28□□□□□ -0.6
UPF3B-204ENST00000619445 CPEB2Q7Z5Q1 589 aaKnown RBP11.28□□□□□ -0.6
UPF3B-204ENST00000619445 ASPGQ86U10 573 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 SIRT6Q8N6T7 355 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 CATSPER1Q8NEC5 780 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 OR51Q1Q8NH59 317 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 RELTQ969Z4 430 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 CYTH2Q99418 400 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 VN1R1Q9GZP7 353 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 CLK4Q9HAZ1 481 aaKnown RBP11.28□□□□□ -0.6
UPF3B-204ENST00000619445 ABCF3Q9NUQ8 709 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 STMN3Q9NZ72 180 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 ENTPD4Q9Y227 616 aa11.28□□□□□ -0.6
UPF3B-204ENST00000619445 LRBAP50851 2863 aa11.27□□□□□ -0.61
UPF3B-204ENST00000619445 P2RX6O15547 441 aa11.27□□□□□ -0.61
UPF3B-204ENST00000619445 ZSCAN12O43309 604 aa11.27□□□□□ -0.61
UPF3B-204ENST00000619445 HNRNPRO43390 633 aaKnown RBP11.27□□□□□ -0.61
UPF3B-204ENST00000619445 ENO2P09104 434 aaPredicted RBP11.27□□□□□ -0.61
UPF3B-204ENST00000619445 JAK1P23458 1154 aa11.27□□□□□ -0.61
UPF3B-204ENST00000619445 XCR1P46094 333 aa11.27□□□□□ -0.61
UPF3B-204ENST00000619445 CCR8P51685 355 aa11.27□□□□□ -0.61
UPF3B-204ENST00000619445 CASP6P55212 293 aa11.27□□□□□ -0.61
UPF3B-204ENST00000619445 IL2P60568 153 aa11.27□□□□□ -0.61
UPF3B-204ENST00000619445 CSNK1G2P78368 415 aa11.27□□□□□ -0.61
UPF3B-204ENST00000619445 MEF2AQ02078 507 aaPredicted RBP11.27□□□□□ -0.61
UPF3B-204ENST00000619445 ZNF33BQ06732 778 aa11.27□□□□□ -0.61
UPF3B-204ENST00000619445 PWP1Q13610 501 aa11.27□□□□□ -0.61
UPF3B-204ENST00000619445 RNASEH2BQ5TBB1 312 aaKnown RBP11.27□□□□□ -0.61
UPF3B-204ENST00000619445 DUPD1Q68J44 220 aa11.27□□□□□ -0.61
UPF3B-204ENST00000619445 HIST2H2BCQ6DN03 193 aa11.27□□□□□ -0.61
UPF3B-204ENST00000619445 FAAH2Q6GMR7 532 aa11.27□□□□□ -0.61
UPF3B-204ENST00000619445 HIBCHQ6NVY1 386 aaPredicted RBP11.27□□□□□ -0.61
UPF3B-204ENST00000619445 VN1R4Q7Z5H5 301 aa11.27□□□□□ -0.61
UPF3B-204ENST00000619445 STRA8Q7Z7C7 330 aa11.27□□□□□ -0.61
UPF3B-204ENST00000619445 TICAM1Q8IUC6 712 aa11.27□□□□□ -0.61
Retrieved 100 of 20,778 RNA–protein pairs in 29.5 ms