RNA–Protein interactions for RNA: ENST00000616154.1

CDX1-202, Transcript of caudal type homeobox 1, humanhuman

TSL 1 (best) BASIC

Gene CDX1, Length 1,343 nt, Biotype protein coding, Subcellular localisation Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CDX1-202ENST00000616154 BBS9Q3SYG4 887 aa18.01■□□□□ 0.47
CDX1-202ENST00000616154 VWA2Q5GFL6 755 aa18.01■□□□□ 0.47
CDX1-202ENST00000616154 LRRC8EQ6NSJ5 796 aa18.01■□□□□ 0.47
CDX1-202ENST00000616154 NDUFAF7Q7L592 441 aa18.01■□□□□ 0.47
CDX1-202ENST00000616154 PAQR7Q86WK9 346 aa18.01■□□□□ 0.47
CDX1-202ENST00000616154 IFT20Q8IY31 132 aa18.01■□□□□ 0.47
CDX1-202ENST00000616154 MYRIPQ8NFW9 859 aa18.01■□□□□ 0.47
CDX1-202ENST00000616154 SLX1AQ9BQ83 275 aa18.01■□□□□ 0.47
CDX1-202ENST00000616154 PLCD4Q9BRC7 762 aa18.01■□□□□ 0.47
CDX1-202ENST00000616154 DPH5Q9H2P9 285 aa18.01■□□□□ 0.47
CDX1-202ENST00000616154 MRPS30Q9NP92 439 aaKnown RBP18.01■□□□□ 0.47
CDX1-202ENST00000616154 NSG1A0A0A6YYJ2 146 aa18■□□□□ 0.47
CDX1-202ENST00000616154 LRRTM2O43300 516 aa18■□□□□ 0.47
CDX1-202ENST00000616154 RPA3P35244 121 aaPredicted RBP18■□□□□ 0.47
CDX1-202ENST00000616154 SOX11P35716 441 aa18■□□□□ 0.47
CDX1-202ENST00000616154 ELK3P41970 407 aa18■□□□□ 0.47
CDX1-202ENST00000616154 TEDDM1Q5T9Z0 273 aa18■□□□□ 0.47
CDX1-202ENST00000616154 WDR93Q6P2C0 686 aa18■□□□□ 0.47
CDX1-202ENST00000616154 FAM180AQ6UWF9 173 aa18■□□□□ 0.47
CDX1-202ENST00000616154 SUSD1Q6UWL2 747 aa18■□□□□ 0.47
CDX1-202ENST00000616154 LAPTM4BQ86VI4 370 aa18■□□□□ 0.47
CDX1-202ENST00000616154 CSNK1A1LQ8N752 337 aa18■□□□□ 0.47
CDX1-202ENST00000616154 CATSPER1Q8NEC5 780 aa18■□□□□ 0.47
CDX1-202ENST00000616154 PSMF1Q92530 271 aa18■□□□□ 0.47
CDX1-202ENST00000616154 PKP4Q99569 1192 aa18■□□□□ 0.47
CDX1-202ENST00000616154 SYNPO2LQ9H987 977 aa18■□□□□ 0.47
CDX1-202ENST00000616154 C14orf105Q9NVL8 296 aa18■□□□□ 0.47
CDX1-202ENST00000616154 CORO1CQ9ULV4 474 aaPredicted RBP18■□□□□ 0.47
CDX1-202ENST00000616154 OSGIN2Q9Y236 505 aa18■□□□□ 0.47
CDX1-202ENST00000616154 RUVBL1Q9Y265 456 aaKnown RBP18■□□□□ 0.47
CDX1-202ENST00000616154 IGKV1-8A0A0C4DH67 115 aa17.99■□□□□ 0.47
CDX1-202ENST00000616154 ZNF839A8K0R7 811 aa17.99■□□□□ 0.47
CDX1-202ENST00000616154 IDSB3KWA1 339 aa17.99■□□□□ 0.47
CDX1-202ENST00000616154 SLC16A8O95907 504 aa17.99■□□□□ 0.47
CDX1-202ENST00000616154 AHSGP02765 367 aa17.99■□□□□ 0.47
CDX1-202ENST00000616154 PRR35P0CG20 571 aa17.99■□□□□ 0.47
CDX1-202ENST00000616154 EMP2P54851 167 aa17.99■□□□□ 0.47
CDX1-202ENST00000616154 ARL4CP56559 192 aa17.99■□□□□ 0.47
CDX1-202ENST00000616154 RELAQ04206 551 aa17.99■□□□□ 0.47
CDX1-202ENST00000616154 CALCOCO2Q13137 446 aa17.99■□□□□ 0.47
CDX1-202ENST00000616154 GARNL3Q5VVW2 1013 aa17.99■□□□□ 0.47
CDX1-202ENST00000616154 ICE2Q659A1 982 aa17.99■□□□□ 0.47
CDX1-202ENST00000616154 ZNF425Q6IV72 752 aa17.99■□□□□ 0.47
CDX1-202ENST00000616154 UGT3A1Q6NUS8 523 aa17.99■□□□□ 0.47
CDX1-202ENST00000616154 LRRC56Q8IYG6 542 aaPredicted RBP17.99■□□□□ 0.47
CDX1-202ENST00000616154 BCORP1Q8N888 145 aa17.99■□□□□ 0.47
CDX1-202ENST00000616154 FBXO25Q8TCJ0 367 aa17.99■□□□□ 0.47
CDX1-202ENST00000616154 PWWP2AQ96N64 755 aa17.99■□□□□ 0.47
CDX1-202ENST00000616154 PHACTR1Q9C0D0 580 aa17.99■□□□□ 0.47
CDX1-202ENST00000616154 UTP6Q9NYH9 597 aaKnown RBP17.99■□□□□ 0.47
CDX1-202ENST00000616154 TRPC4Q9UBN4 977 aa17.99■□□□□ 0.47
CDX1-202ENST00000616154 NOL12Q9UGY1 213 aaKnown RBP eCLIP17.99■□□□□ 0.47
CDX1-202ENST00000616154 RAB21Q9UL25 225 aa17.99■□□□□ 0.47
CDX1-202ENST00000616154 V9GYY5 206 aaPredicted RBP17.99■□□□□ 0.47
CDX1-202ENST00000616154 E7ENX8 843 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 PCDH17O14917 1159 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 CCNDBP1O95273 360 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 SERPINA7P05543 415 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 TUBBP07437 444 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 CXCR2P25025 360 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 SLC26A3P40879 764 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 PNLIPRP1P54315 467 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 ARG2P78540 354 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 TAP2Q03519 686 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 PRDX1Q06830 199 aaKnown RBP17.98■□□□□ 0.47
CDX1-202ENST00000616154 INAQ16352 499 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 HKDC1Q2TB90 917 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 TICAM1Q8IUC6 712 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 CPNE9Q8IYJ1 553 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 ARHGEF39Q8N4T4 335 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 AMER3Q8N944 861 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 OR1N1Q8NGS0 311 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 BRIX1Q8TDN6 353 aaKnown RBP17.98■□□□□ 0.47
CDX1-202ENST00000616154 ZNF480Q8WV37 535 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 DGCR8Q8WYQ5 773 aaKnown RBP eCLIP17.98■□□□□ 0.47
CDX1-202ENST00000616154 OR2A5Q96R48 311 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 TGIF2Q9GZN2 237 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 MKKSQ9NPJ1 570 aaPredicted RBP17.98■□□□□ 0.47
CDX1-202ENST00000616154 OLAHQ9NV23 265 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 TAS2R13Q9NYV9 303 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 TAC3Q9UHF0 121 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 TRMT6Q9UJA5 497 aaKnown RBP17.98■□□□□ 0.47
CDX1-202ENST00000616154 CHMP2BQ9UQN3 213 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 IGHV1-45A0A0A0MS14 117 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 DYTNA2CJ06 578 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 BMP10O95393 424 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 STSP08842 583 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 EZRP15311 586 aaKnown RBP17.98■□□□□ 0.47
CDX1-202ENST00000616154 TNFSF10P50591 281 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 EEF1A2Q05639 463 aaKnown RBP17.98■□□□□ 0.47
CDX1-202ENST00000616154 SP140Q13342 867 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 TSTA3Q13630 321 aaPredicted RBP17.98■□□□□ 0.47
CDX1-202ENST00000616154 NAA30Q147X3 362 aaPredicted RBP17.98■□□□□ 0.47
CDX1-202ENST00000616154 ZRSR2Q15696 482 aaKnown RBP17.98■□□□□ 0.47
CDX1-202ENST00000616154 RBM20Q5T481 1227 aaKnown RBP17.98■□□□□ 0.47
CDX1-202ENST00000616154 ZNF324BQ6AW86 544 aaPredicted RBP17.98■□□□□ 0.47
CDX1-202ENST00000616154 TRMT10BQ6PF06 316 aaKnown RBP17.98■□□□□ 0.47
CDX1-202ENST00000616154 PIWIL4Q7Z3Z4 852 aaKnown RBP17.98■□□□□ 0.47
CDX1-202ENST00000616154 SPNS2Q8IVW8 549 aa17.98■□□□□ 0.47
CDX1-202ENST00000616154 SLC34A3Q8N130 599 aa17.98■□□□□ 0.47
Retrieved 100 of 20,778 RNA–protein pairs in 37.6 ms