RNA–Protein interactions for RNA: ENST00000600310.5

UPF1-209, Transcript of UPF1, RNA helicase and ATPase, humanhuman

TSL 4

Gene UPF1, Length 750 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
UPF1-209ENST00000600310 AHRP35869 848 aa18.47■□□□□ 0.55
UPF1-209ENST00000600310 ARSFP54793 590 aa18.47■□□□□ 0.55
UPF1-209ENST00000600310 EMP3P54852 163 aa18.47■□□□□ 0.55
UPF1-209ENST00000600310 CHIT1Q13231 466 aa18.47■□□□□ 0.55
UPF1-209ENST00000600310 DOC2AQ14183 400 aa18.47■□□□□ 0.55
UPF1-209ENST00000600310 SLBPQ14493 270 aaKnown RBP eCLIP18.47■□□□□ 0.55
UPF1-209ENST00000600310 NLGN4XQ8N0W4 816 aa18.47■□□□□ 0.55
UPF1-209ENST00000600310 CCDC63Q8NA47 563 aa18.47■□□□□ 0.55
UPF1-209ENST00000600310 TTC29Q8NA56 475 aaPredicted RBP18.47■□□□□ 0.55
UPF1-209ENST00000600310 SLC38A9Q8NBW4 561 aa18.47■□□□□ 0.55
UPF1-209ENST00000600310 GALNT6Q8NCL4 622 aa18.47■□□□□ 0.55
UPF1-209ENST00000600310 ZNF248Q8NDW4 579 aa18.47■□□□□ 0.55
UPF1-209ENST00000600310 NLGN4YQ8NFZ3 816 aaPredicted RBP18.47■□□□□ 0.55
UPF1-209ENST00000600310 TCP10LQ8TDR4 215 aa18.47■□□□□ 0.55
UPF1-209ENST00000600310 TM4SF19Q96DZ7 209 aa18.47■□□□□ 0.55
UPF1-209ENST00000600310 RNF31Q96EP0 1072 aa18.47■□□□□ 0.55
UPF1-209ENST00000600310 PTCD3Q96EY7 689 aaKnown RBP18.47■□□□□ 0.55
UPF1-209ENST00000600310 NDC1Q9BTX1 674 aa18.47■□□□□ 0.55
UPF1-209ENST00000600310 EFCAB11Q9BUY7 163 aa18.47■□□□□ 0.55
UPF1-209ENST00000600310 SLC7A5P2Q9GIP4 190 aa18.47■□□□□ 0.55
UPF1-209ENST00000600310 VIPAS39Q9H9C1 493 aa18.47■□□□□ 0.55
UPF1-209ENST00000600310 TMBIM4Q9HC24 238 aa18.47■□□□□ 0.55
UPF1-209ENST00000600310 SSU72Q9NP77 194 aaKnown RBP18.47■□□□□ 0.55
UPF1-209ENST00000600310 STARD5Q9NSY2 213 aa18.47■□□□□ 0.55
UPF1-209ENST00000600310 GOLGA6L10A6NI86 522 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 CPA3P15088 417 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 CD22P20273 847 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 IMPDH1P20839 514 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 RORAP35398 523 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 GPS2Q13227 327 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 LAPTM5Q13571 262 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 FAM214AQ32MH5 1076 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 UNC50Q53HI1 259 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 PAGE2BQ5JRK9 111 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 ZNF678Q5SXM1 525 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 RHBDD2Q6NTF9 364 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 C6orf15Q6UXA7 325 aaPredicted RBP18.46■□□□□ 0.55
UPF1-209ENST00000600310 ASPGQ86U10 573 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 PROSER1Q86XN7 944 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 KRT78Q8N1N4 520 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 ESX1Q8N693 406 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 CAMKVQ8NCB2 501 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 ARMC2Q8NEN0 867 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 ZNF483Q8TF39 744 aaPredicted RBP18.46■□□□□ 0.55
UPF1-209ENST00000600310 NKD1Q969G9 470 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 CLIP3Q96DZ5 547 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 L3HYPDHQ96EM0 354 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 NSUN5Q96P11 429 aaKnown RBP18.46■□□□□ 0.55
UPF1-209ENST00000600310 TMEM237Q96Q45 408 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 IPPKQ9H8X2 491 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 ZBTB26Q9HCK0 441 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 SLC17A7Q9P2U7 560 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 ZFP69BQ9UJL9 534 aa18.46■□□□□ 0.55
UPF1-209ENST00000600310 RUVBL1Q9Y265 456 aaKnown RBP18.46■□□□□ 0.55
UPF1-209ENST00000600310 UQCRHLA0A096LP55 91 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 TEX51A0A1B0GUA7 166 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 HYKKA2RU49 373 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 TAF4O00268 1085 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 P2RX6O15547 441 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 UGDHO60701 494 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 UQCRHP07919 91 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 DNAJB13P59910 316 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 CLN3Q13286 438 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 RBBP5Q15291 538 aaKnown RBP18.45■□□□□ 0.54
UPF1-209ENST00000600310 MANEAQ5SRI9 462 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 TMIGD1Q6UXZ0 262 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 ARHGEF39Q8N4T4 335 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 ANKRD53Q8N9V6 530 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 PROKR1Q8TCW9 393 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 KCNE4Q8WWG9 221 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 SLC13A3Q8WWT9 602 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 SEC16BQ96JE7 1060 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 FAM111AQ96PZ2 611 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 NLNQ9BYT8 704 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 NOL11Q9H8H0 719 aaKnown RBP18.45■□□□□ 0.54
UPF1-209ENST00000600310 CUTCQ9NTM9 273 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 PADI1Q9ULC6 663 aa18.45■□□□□ 0.54
UPF1-209ENST00000600310 MEN1O00255 615 aa18.44■□□□□ 0.54
UPF1-209ENST00000600310 OR7A17O14581 309 aa18.44■□□□□ 0.54
UPF1-209ENST00000600310 SUPT7LO94864 414 aa18.44■□□□□ 0.54
UPF1-209ENST00000600310 KLK3P07288 261 aaPredicted RBP18.44■□□□□ 0.54
UPF1-209ENST00000600310 GSTM2P28161 218 aa18.44■□□□□ 0.54
UPF1-209ENST00000600310 EIF2S3P41091 472 aaKnown RBP18.44■□□□□ 0.54
UPF1-209ENST00000600310 ATP1A2P50993 1020 aa18.44■□□□□ 0.54
UPF1-209ENST00000600310 CDH13P55290 713 aa18.44■□□□□ 0.54
UPF1-209ENST00000600310 PWP1Q13610 501 aa18.44■□□□□ 0.54
UPF1-209ENST00000600310 TGIF1Q15583 401 aa18.44■□□□□ 0.54
UPF1-209ENST00000600310 HIST2H2ACQ16777 129 aaPredicted RBP18.44■□□□□ 0.54
UPF1-209ENST00000600310 MUM1Q2TAK8 710 aa18.44■□□□□ 0.54
UPF1-209ENST00000600310 HKDC1Q2TB90 917 aa18.44■□□□□ 0.54
UPF1-209ENST00000600310 GARNL3Q5VVW2 1013 aa18.44■□□□□ 0.54
UPF1-209ENST00000600310 LIPJQ5W064 366 aa18.44■□□□□ 0.54
UPF1-209ENST00000600310 ZNF385CQ66K41 422 aaPredicted RBP18.44■□□□□ 0.54
UPF1-209ENST00000600310 HIST2H2AA3Q6FI13 130 aa18.44■□□□□ 0.54
UPF1-209ENST00000600310 GRHL2Q6ISB3 625 aa18.44■□□□□ 0.54
UPF1-209ENST00000600310 ZNF517Q6ZMY9 492 aaPredicted RBP18.44■□□□□ 0.54
UPF1-209ENST00000600310 CACNA2D3Q8IZS8 1091 aa18.44■□□□□ 0.54
UPF1-209ENST00000600310 DSELQ8IZU8 1212 aa18.44■□□□□ 0.54
UPF1-209ENST00000600310 L3MBTL4Q8NA19 623 aa18.44■□□□□ 0.54
UPF1-209ENST00000600310 TTLQ8NG68 377 aa18.44■□□□□ 0.54
Retrieved 100 of 20,778 RNA–protein pairs in 49.7 ms