RNA–Protein interactions for RNA: ENST00000597423.1

TRIM28-209, Transcript of tripartite motif containing 28, humanhuman

TSL 3

Gene TRIM28, Length 733 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TRIM28-209ENST00000597423 TMEM35AQ53FP2 167 aa14.62□□□□□ -0.07
TRIM28-209ENST00000597423 ZC3H12BQ5HYM0 836 aaKnown RBP14.62□□□□□ -0.07
TRIM28-209ENST00000597423 CACHD1Q5VU97 1274 aa14.62□□□□□ -0.07
TRIM28-209ENST00000597423 WDR74Q6RFH5 385 aaPredicted RBP14.62□□□□□ -0.07
TRIM28-209ENST00000597423 ZFAND4Q86XD8 727 aa14.62□□□□□ -0.07
TRIM28-209ENST00000597423 KMT2EQ8IZD2 1858 aa14.62□□□□□ -0.07
TRIM28-209ENST00000597423 ZNF655Q8N720 491 aaPredicted RBP14.62□□□□□ -0.07
TRIM28-209ENST00000597423 Q8N9G6 341 aaPredicted RBP14.62□□□□□ -0.07
TRIM28-209ENST00000597423 BAHD1Q8TBE0 780 aaPredicted RBP14.62□□□□□ -0.07
TRIM28-209ENST00000597423 RSC1A1Q92681 617 aa14.62□□□□□ -0.07
TRIM28-209ENST00000597423 RERGQ96A58 199 aaPredicted RBP14.62□□□□□ -0.07
TRIM28-209ENST00000597423 CCDC74AQ96AQ1 378 aa14.62□□□□□ -0.07
TRIM28-209ENST00000597423 TCTN2Q96GX1 697 aa14.62□□□□□ -0.07
TRIM28-209ENST00000597423 QRFPRQ96P65 431 aa14.62□□□□□ -0.07
TRIM28-209ENST00000597423 ACPTQ9BZG2 426 aa14.62□□□□□ -0.07
TRIM28-209ENST00000597423 ABCG4Q9H172 646 aa14.62□□□□□ -0.07
TRIM28-209ENST00000597423 SMOC1Q9H4F8 434 aa14.62□□□□□ -0.07
TRIM28-209ENST00000597423 DMRT3Q9NQL9 472 aa14.62□□□□□ -0.07
TRIM28-209ENST00000597423 SAR1AQ9NR31 198 aa14.62□□□□□ -0.07
TRIM28-209ENST00000597423 NOP53Q9NZM5 478 aaKnown RBP14.62□□□□□ -0.07
TRIM28-209ENST00000597423 PTGDR2Q9Y5Y4 395 aa14.62□□□□□ -0.07
TRIM28-209ENST00000597423 AP1M2Q9Y6Q5 423 aa14.62□□□□□ -0.07
TRIM28-209ENST00000597423 TDRD6O60522 2096 aaKnown RBP14.61□□□□□ -0.07
TRIM28-209ENST00000597423 A0A0C4DFX4 3053 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 FEZF1A0PJY2 475 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 LNP1A1A4G5 178 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 OR2A25A4D2G3 310 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 B4GAT1O43505 415 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 KIAA0754O94854 1291 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 LDOC1O95751 146 aaPredicted RBP14.61□□□□□ -0.07
TRIM28-209ENST00000597423 LMNAP02545 664 aaKnown RBP14.61□□□□□ -0.07
TRIM28-209ENST00000597423 PRPS2P11908 318 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 ACPPP15309 386 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 RPS13P62277 151 aaKnown RBP14.61□□□□□ -0.07
TRIM28-209ENST00000597423 YBX1P67809 324 aaKnown RBP14.61□□□□□ -0.07
TRIM28-209ENST00000597423 ACSM2AQ08AH3 577 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 SQLEQ14534 574 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 ZSCAN26Q16670 478 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 AMZ1Q400G9 498 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 SPIN4Q56A73 249 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 MANEAQ5SRI9 462 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 ACSM2BQ68CK6 577 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 C6orf89Q6UWU4 347 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 DBX2Q6ZNG2 339 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 CCDC121Q6ZUS5 278 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 CLNKQ7Z7G1 428 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 FAM20CQ8IXL6 584 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 MIER2Q8N344 545 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 FITM2Q8N6M3 262 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 ZNF740Q8NDX6 193 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 SRFBP1Q8NEF9 429 aaKnown RBP14.61□□□□□ -0.07
TRIM28-209ENST00000597423 PRSS33Q8NF86 280 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 OR2I1PQ8NGU4 316 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 OR2T11Q8NH01 316 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 ERP27Q96DN0 273 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 HBEGFQ99075 208 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 NLNQ9BYT8 704 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 NMUR2Q9GZQ4 415 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 MYLK2Q9H1R3 596 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 TMEM45AQ9NWC5 275 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 G3BP2Q9UN86 482 aaKnown RBP14.61□□□□□ -0.07
TRIM28-209ENST00000597423 RUVBL1Q9Y265 456 aaKnown RBP14.61□□□□□ -0.07
TRIM28-209ENST00000597423 CCL27Q9Y4X3 112 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 FANCMQ8IYD8 2048 aa14.61□□□□□ -0.07
TRIM28-209ENST00000597423 CACNA1EQ15878 2313 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 TLCD2A6NGC4 264 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 URADA6NGE7 173 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 TXNDC9O14530 226 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 HAT1O14929 419 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 ATP5HO75947 161 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 SEMA3DO95025 777 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 TGFB1P01137 390 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 SERPIND1P05546 499 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 MAGP20916 626 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 ARL4DP49703 201 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 MNAT1P51948 309 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 ARFIP1P53367 373 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 STXBP1P61764 594 aaKnown RBP14.6□□□□□ -0.07
TRIM28-209ENST00000597423 RGS1Q08116 209 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 PWP1Q13610 501 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 KRT72Q14CN4 511 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 MAPRE2Q15555 327 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 CSRP2Q16527 193 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 PROX2Q3B8N5 592 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 DEPDC1Q5TB30 811 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 FAM91A1Q658Y4 838 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 TCEAL6Q6IPX3 200 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 FBXO42Q6P3S6 717 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 PAGE2Q7Z2X7 111 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 TRIM73Q86UV7 250 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 SUPV3L1Q8IYB8 786 aaKnown RBP eCLIP14.6□□□□□ -0.07
TRIM28-209ENST00000597423 CAMKVQ8NCB2 501 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 RHBDD1Q8TEB9 315 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 SLC13A3Q8WWT9 602 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 TCEAL3Q969E4 200 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 CMTM5Q96DZ9 223 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 CATSPER2Q96P56 530 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 TGM7Q96PF1 710 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 TRAPPC9Q96Q05 1148 aa14.6□□□□□ -0.07
TRIM28-209ENST00000597423 ZFYVE21Q9BQ24 234 aa14.6□□□□□ -0.07
Retrieved 100 of 20,778 RNA–protein pairs in 29.2 ms