RNA–Protein interactions for RNA: ENST00000593099.5

LIG3-216, Transcript of DNA ligase 3, humanhuman

TSL 2

Gene LIG3, Length 4,664 nt, Biotype retained intron, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIG3-216ENST00000593099 MTTPP55157 894 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 MRPS22P82650 360 aaKnown RBP9.51□□□□□ -0.89
LIG3-216ENST00000593099 ZNF678Q5SXM1 525 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 TMEM26Q6ZUK4 368 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 IQCF2Q8IXL9 164 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 REEP1Q9H902 201 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 KRT84Q9NSB2 600 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 TMEM184CQ9NVA4 438 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 LYARQ9NX58 379 aaKnown RBP9.51□□□□□ -0.89
LIG3-216ENST00000593099 MS4A12Q9NXJ0 267 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 TAAR2Q9P1P5 351 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 SLC6A14Q9UN76 642 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 AP1G1O43747 822 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 LDOC1O95751 146 aaPredicted RBP9.51□□□□□ -0.89
LIG3-216ENST00000593099 TCF3P15923 654 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 IL12BP29460 328 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 SLC7A2P52569 658 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 RPS7P62081 194 aaKnown RBP9.51□□□□□ -0.89
LIG3-216ENST00000593099 LARS2Q15031 903 aaKnown RBP9.51□□□□□ -0.89
LIG3-216ENST00000593099 HKDC1Q2TB90 917 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 COX18Q8N8Q8 333 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 ZSCAN1Q8NBB4 408 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 OR5AR1Q8NGP9 310 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 C6orf106Q9H6K1 298 aaPredicted RBP9.51□□□□□ -0.89
LIG3-216ENST00000593099 ZCCHC3Q9NUD5 404 aaKnown RBP9.51□□□□□ -0.89
LIG3-216ENST00000593099 CPNE7Q9UBL6 633 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 DUSP12Q9UNI6 340 aa9.51□□□□□ -0.89
LIG3-216ENST00000593099 LINC00854A0A1B0GVQ3 168 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 TRIM38O00635 465 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 AHCYL1O43865 530 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 HBQ1P09105 142 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 CCR5P51681 352 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 NRG3P56975 720 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 DCTN2Q13561 401 aaKnown RBP9.5□□□□□ -0.89
LIG3-216ENST00000593099 FAM174BQ3ZCQ3 159 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 GCNT6Q5T4J0 391 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 NEK10Q6ZWH5 1172 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 ZNF248Q8NDW4 579 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 OR2T12Q8NG77 320 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 OR13J1Q8NGT2 312 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 ZNF563Q8TA94 476 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 EZH1Q92800 747 aaPredicted RBP9.5□□□□□ -0.89
LIG3-216ENST00000593099 REXO5Q96IC2 774 aaKnown RBP9.5□□□□□ -0.89
LIG3-216ENST00000593099 TRPV4Q9HBA0 871 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 SCN3BQ9NY72 215 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 MRPL39Q9NYK5 338 aaKnown RBP9.5□□□□□ -0.89
LIG3-216ENST00000593099 LRIT1Q9P2V4 623 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 SUCOQ9UBS9 1254 aaKnown RBP9.5□□□□□ -0.89
LIG3-216ENST00000593099 PADI2Q9Y2J8 665 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 MAP4K5Q9Y4K4 846 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 IGFALSP35858 605 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 KIR2DS3Q14952 304 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 SMAD2Q15796 467 aaKnown RBP9.5□□□□□ -0.89
LIG3-216ENST00000593099 KCTD11Q693B1 232 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 NXPE4Q6UWF7 544 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 MFSD2AQ8NA29 543 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 PNPT1Q8TCS8 783 aaKnown RBP9.5□□□□□ -0.89
LIG3-216ENST00000593099 CD200R1Q8TD46 325 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 FBXL8Q96CD0 374 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 SLC35G5Q96KT7 338 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 NMUR2Q9GZQ4 415 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 PDE10AQ9Y233 779 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 SH3D21A4FU49 640 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 WFS1O76024 890 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 SLC16A8O95907 504 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 HEXBP07686 556 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 IDH3AP50213 366 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 RPS15P62841 145 aaKnown RBP9.5□□□□□ -0.89
LIG3-216ENST00000593099 PTSQ03393 145 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 PWP1Q13610 501 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 CDKN3Q16667 212 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 ZNF789Q5FWF6 425 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 AFMIDQ63HM1 303 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 Q6ZS52 159 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 SLC29A4Q7RTT9 530 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 ANKRD46Q86W74 232 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 PKP4Q99569 1192 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 SEC14L3Q9UDX4 400 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 OAS3Q9Y6K5 1087 aaKnown RBP9.5□□□□□ -0.89
LIG3-216ENST00000593099 MYO18AQ92614 2054 aaKnown RBP9.5□□□□□ -0.89
LIG3-216ENST00000593099 C17orf113A0A1B0GUU1 675 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 DUXAA6NLW8 204 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 CAPN5O15484 640 aaPredicted RBP9.5□□□□□ -0.89
LIG3-216ENST00000593099 SCN2BO60939 215 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 NR2F6P10588 404 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 RPS6KA3P51812 740 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 C5orf22Q49AR2 442 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 CDKL4Q5MAI5 379 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 ZFP1Q6P2D0 407 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 FRMD7Q6ZUT3 714 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 CYP4Z2PQ8N1L4 340 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 RASGEF1AQ8N9B8 481 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 C11orf65Q8NCR3 313 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 C7orf57Q8NEG2 295 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 OR13H1Q8NG92 308 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 NPAS2Q99743 824 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 IER2Q9BTL4 223 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 POT1Q9NUX5 634 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 GPRC5BQ9NZH0 403 aa9.5□□□□□ -0.89
LIG3-216ENST00000593099 ZNF282Q9UDV7 671 aaPredicted RBP9.5□□□□□ -0.89
Retrieved 100 of 20,778 RNA–protein pairs in 26.3 ms