RNA–Protein interactions for RNA: ENST00000593074.5

CLIP3-206, Transcript of CAP-Gly domain containing linker protein 3, humanhuman

APPRIS P1 TSL 2 BASIC

Gene CLIP3, Length 2,080 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLIP3-206ENST00000593074 PHF12Q96QT6 1004 aa18.97■□□□□ 0.63
CLIP3-206ENST00000593074 RSPH9Q9H1X1 276 aaPredicted RBP18.97■□□□□ 0.63
CLIP3-206ENST00000593074 SLC24A3Q9HC58 644 aa18.97■□□□□ 0.63
CLIP3-206ENST00000593074 DMRT3Q9NQL9 472 aa18.97■□□□□ 0.63
CLIP3-206ENST00000593074 CCDC177Q9NQR7 707 aaPredicted RBP18.97■□□□□ 0.63
CLIP3-206ENST00000593074 CLEC1BQ9P126 229 aa18.97■□□□□ 0.63
CLIP3-206ENST00000593074 BTNL2Q9UIR0 455 aa18.97■□□□□ 0.63
CLIP3-206ENST00000593074 GMEB1Q9Y692 573 aa18.97■□□□□ 0.63
CLIP3-206ENST00000593074 GABRR3A8MPY1 467 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 G3V2T6 193 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 MID1O15344 667 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 BMP10O95393 424 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 C1QCP02747 245 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 ALBP02768 609 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 HPCAL1P37235 193 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 MAGEA2P43356 314 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 GALK1P51570 392 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 PNCKQ6P2M8 343 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 STK32CQ86UX6 486 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 HEATR4Q86WZ0 1026 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 TRIML2Q8N7C3 387 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 ZNF513Q8N8E2 541 aaPredicted RBP18.96■□□□□ 0.63
CLIP3-206ENST00000593074 GPR156Q8NFN8 814 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 ZFP28Q8NHY6 868 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 SH3KBP1Q96B97 665 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 COQ8BQ96D53 544 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 CXorf40BQ96DE9 158 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 PYURFQ96I23 114 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 TMEM98Q9Y2Y6 226 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 MAGED1Q9Y5V3 778 aaPredicted RBP18.96■□□□□ 0.63
CLIP3-206ENST00000593074 IGLON5A6NGN9 336 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 PCDH7O60245 1069 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 PCDH8O95206 1070 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 THRBP10828 461 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 CAMK2GQ13555 558 aaPredicted RBP18.96■□□□□ 0.63
CLIP3-206ENST00000593074 HKDC1Q2TB90 917 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 CPTPQ5TA50 214 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 CPZQ66K79 652 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 ANKRD26P1Q6NSI1 321 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 ERICH5Q6P6B1 374 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 NXPE4Q6UWF7 544 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 ZZZ3Q8IYH5 903 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 OFCC1Q8IZS5 231 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 CLEC4FQ8N1N0 589 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 SPDYE1Q8NFV5 336 aaPredicted RBP18.96■□□□□ 0.63
CLIP3-206ENST00000593074 SDCCAG3Q96C92 435 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 RIPOR3Q96MK2 946 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 AASDHPPTQ9NRN7 309 aa18.96■□□□□ 0.63
CLIP3-206ENST00000593074 SAMD4AQ9UPU9 718 aaKnown RBP18.96■□□□□ 0.63
CLIP3-206ENST00000593074 SH3BGRLO75368 114 aa18.95■□□□□ 0.62
CLIP3-206ENST00000593074 KCNK5O95279 499 aa18.95■□□□□ 0.62
CLIP3-206ENST00000593074 ETS2P15036 469 aa18.95■□□□□ 0.62
CLIP3-206ENST00000593074 IDSP22304 550 aa18.95■□□□□ 0.62
CLIP3-206ENST00000593074 RPL10P27635 214 aaKnown RBP18.95■□□□□ 0.62
CLIP3-206ENST00000593074 TNFRSF4P43489 277 aa18.95■□□□□ 0.62
CLIP3-206ENST00000593074 SOX9P48436 509 aa18.95■□□□□ 0.62
CLIP3-206ENST00000593074 TAS2R38P59533 333 aa18.95■□□□□ 0.62
CLIP3-206ENST00000593074 PPP2R2BQ00005 443 aa18.95■□□□□ 0.62
CLIP3-206ENST00000593074 CDK3Q00526 305 aa18.95■□□□□ 0.62
CLIP3-206ENST00000593074 TSTA3Q13630 321 aaPredicted RBP18.95■□□□□ 0.62
CLIP3-206ENST00000593074 MYBPC3Q14896 1274 aa18.95■□□□□ 0.62
CLIP3-206ENST00000593074 VMACQ2NL98 169 aa18.95■□□□□ 0.62
CLIP3-206ENST00000593074 AGBL4Q5VU57 503 aa18.95■□□□□ 0.62
CLIP3-206ENST00000593074 ZNF621Q6ZSS3 439 aa18.95■□□□□ 0.62
CLIP3-206ENST00000593074 CACUL1Q86Y37 369 aa18.95■□□□□ 0.62
CLIP3-206ENST00000593074 ADHFE1Q8IWW8 467 aa18.95■□□□□ 0.62
CLIP3-206ENST00000593074 LMNTD1Q8N9Z9 388 aa18.95■□□□□ 0.62
CLIP3-206ENST00000593074 SOX17Q9H6I2 414 aaPredicted RBP18.95■□□□□ 0.62
CLIP3-206ENST00000593074 USE1Q9NZ43 259 aa18.95■□□□□ 0.62
CLIP3-206ENST00000593074 TSC22D4Q9Y3Q8 395 aa18.95■□□□□ 0.62
CLIP3-206ENST00000593074 PCDHB11Q9Y5F2 797 aa18.95■□□□□ 0.62
CLIP3-206ENST00000593074 ADH1BP00325 375 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 C5AR1P21730 350 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 IST1P53990 364 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 ZNF763Q0D2J5 394 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 LAPTM5Q13571 262 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 HIST2H2ACQ16777 129 aaPredicted RBP18.94■□□□□ 0.62
CLIP3-206ENST00000593074 ANXA8L1Q5VT79 327 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 HIST2H2AA3Q6FI13 130 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 ZCCHC8Q6NZY4 707 aaKnown RBP18.94■□□□□ 0.62
CLIP3-206ENST00000593074 AMZ2Q86W34 360 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 PTOV1Q86YD1 416 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 DCUN1D3Q8IWE4 304 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 HDDC3Q8N4P3 179 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 OXR1Q8N573 874 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 PUM2Q8TB72 1066 aaKnown RBP eCLIP18.94■□□□□ 0.62
CLIP3-206ENST00000593074 SETD7Q8WTS6 366 aaKnown RBP18.94■□□□□ 0.62
CLIP3-206ENST00000593074 OSBPL10Q9BXB5 764 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 TRIM4Q9C037 500 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 EXO1Q9UQ84 846 aaKnown RBP18.94■□□□□ 0.62
CLIP3-206ENST00000593074 ASF1AQ9Y294 204 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 PRKAB1Q9Y478 270 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 DOCK8Q8NF50 2099 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 A0A087WXM4 84 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 GNG14A0A1W2PPG7 69 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 C1orf226A1L170 272 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 PI15O43692 258 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 CPSF4O95639 269 aaKnown RBP18.94■□□□□ 0.62
CLIP3-206ENST00000593074 PCCBP05166 539 aa18.94■□□□□ 0.62
CLIP3-206ENST00000593074 ERGP11308 486 aa18.94■□□□□ 0.62
Retrieved 100 of 20,778 RNA–protein pairs in 19.8 ms