RNA–Protein interactions for RNA: ENST00000575207.5

VPS53-218, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 4

Gene VPS53, Length 575 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-218ENST00000575207 FBXW8Q8N3Y1 598 aa15.06■□□□□ 0
VPS53-218ENST00000575207 FAM109AQ8N4B1 249 aa15.06■□□□□ 0
VPS53-218ENST00000575207 OR2M7Q8NG81 312 aa15.06■□□□□ 0
VPS53-218ENST00000575207 SPATA22Q8NHS9 363 aa15.06■□□□□ 0
VPS53-218ENST00000575207 RAB11FIP5Q9BXF6 653 aa15.06■□□□□ 0
VPS53-218ENST00000575207 CEP41Q9BYV8 373 aa15.06■□□□□ 0
VPS53-218ENST00000575207 DRC3Q9H069 523 aa15.06■□□□□ 0
VPS53-218ENST00000575207 CXorf56Q9H5V9 222 aa15.06■□□□□ 0
VPS53-218ENST00000575207 TIMMDC1Q9NPL8 285 aa15.06■□□□□ 0
VPS53-218ENST00000575207 TRMT1Q9NXH9 659 aaKnown RBP15.06■□□□□ 0
VPS53-218ENST00000575207 NFS1Q9Y697 457 aa15.06■□□□□ 0
VPS53-218ENST00000575207 OR2W5A6NFC9 320 aa15.05■□□□□ -0
VPS53-218ENST00000575207 CTIFO43310 598 aaKnown RBP15.05■□□□□ -0
VPS53-218ENST00000575207 EPPINO95925 133 aa15.05■□□□□ -0
VPS53-218ENST00000575207 TAP2Q03519 686 aa15.05■□□□□ -0
VPS53-218ENST00000575207 FOXO1Q12778 655 aa15.05■□□□□ -0
VPS53-218ENST00000575207 PTPRCAPQ14761 206 aa15.05■□□□□ -0
VPS53-218ENST00000575207 MFSD4BQ5TF39 518 aa15.05■□□□□ -0
VPS53-218ENST00000575207 ABHD13Q7L211 337 aa15.05■□□□□ -0
VPS53-218ENST00000575207 PCGF5Q86SE9 256 aa15.05■□□□□ -0
VPS53-218ENST00000575207 TAX1BP1Q86VP1 789 aa15.05■□□□□ -0
VPS53-218ENST00000575207 TMEM251Q8N6I4 163 aa15.05■□□□□ -0
VPS53-218ENST00000575207 OR2L8Q8NGY9 312 aa15.05■□□□□ -0
VPS53-218ENST00000575207 FAM71BQ8TC56 605 aa15.05■□□□□ -0
VPS53-218ENST00000575207 BLOC1S5Q8TDH9 187 aa15.05■□□□□ -0
VPS53-218ENST00000575207 TMEM171Q8WVE6 324 aa15.05■□□□□ -0
VPS53-218ENST00000575207 AGPAT1Q99943 283 aa15.05■□□□□ -0
VPS53-218ENST00000575207 FICDQ9BVA6 458 aa15.05■□□□□ -0
VPS53-218ENST00000575207 CRLS1Q9UJA2 301 aa15.05■□□□□ -0
VPS53-218ENST00000575207 TESMINQ9Y4I5 508 aa15.05■□□□□ -0
VPS53-218ENST00000575207 DUSP10Q9Y6W6 482 aa15.05■□□□□ -0
VPS53-218ENST00000575207 HEATR5AQ86XA9 2040 aa15.04■□□□□ -0
VPS53-218ENST00000575207 IGLV3-16A0A075B6K0 115 aa15.04■□□□□ -0
VPS53-218ENST00000575207 EEF1E1-BLOC1S5C9J1V9 151 aa15.04■□□□□ -0
VPS53-218ENST00000575207 STX7O15400 261 aaKnown RBP15.04■□□□□ -0
VPS53-218ENST00000575207 EEF1E1O43324 174 aaKnown RBP15.04■□□□□ -0
VPS53-218ENST00000575207 HCN1O60741 890 aa15.04■□□□□ -0
VPS53-218ENST00000575207 IL2RAP01589 272 aa15.04■□□□□ -0
VPS53-218ENST00000575207 CD48P09326 243 aa15.04■□□□□ -0
VPS53-218ENST00000575207 ENDOUP21128 410 aaKnown RBP15.04■□□□□ -0
VPS53-218ENST00000575207 MAGEA5P43359 124 aa15.04■□□□□ -0
VPS53-218ENST00000575207 FAM53BQ14153 422 aa15.04■□□□□ -0
VPS53-218ENST00000575207 HKDC1Q2TB90 917 aa15.04■□□□□ -0
VPS53-218ENST00000575207 ELOA2Q8IYF1 753 aaPredicted RBP15.04■□□□□ -0
VPS53-218ENST00000575207 CSNK1A1LQ8N752 337 aa15.04■□□□□ -0
VPS53-218ENST00000575207 PSD4Q8NDX1 1056 aa15.04■□□□□ -0
VPS53-218ENST00000575207 ULK4Q96C45 1275 aa15.04■□□□□ -0
VPS53-218ENST00000575207 KCNK17Q96T54 332 aa15.04■□□□□ -0
VPS53-218ENST00000575207 SHARPINQ9H0F6 387 aa15.04■□□□□ -0
VPS53-218ENST00000575207 RBSNQ9H1K0 784 aa15.04■□□□□ -0
VPS53-218ENST00000575207 EPB41L4BQ9H329 900 aa15.04■□□□□ -0
VPS53-218ENST00000575207 L2HGDHQ9H9P8 463 aa15.04■□□□□ -0
VPS53-218ENST00000575207 NDRG3Q9UGV2 375 aa15.04■□□□□ -0
VPS53-218ENST00000575207 OR2A25A4D2G3 310 aa15.03■□□□□ -0
VPS53-218ENST00000575207 EPOP01588 193 aa15.03■□□□□ -0
VPS53-218ENST00000575207 XIAPP98170 497 aa15.03■□□□□ -0
VPS53-218ENST00000575207 MPP1Q00013 466 aa15.03■□□□□ -0
VPS53-218ENST00000575207 GBE1Q04446 702 aa15.03■□□□□ -0
VPS53-218ENST00000575207 PPIDQ08752 370 aaKnown RBP15.03■□□□□ -0
VPS53-218ENST00000575207 SLC10A2Q12908 348 aaPredicted RBP15.03■□□□□ -0
VPS53-218ENST00000575207 GRB7Q14451 532 aa15.03■□□□□ -0
VPS53-218ENST00000575207 SIX1Q15475 284 aaPredicted RBP15.03■□□□□ -0
VPS53-218ENST00000575207 SIRPB2Q5JXA9 342 aa15.03■□□□□ -0
VPS53-218ENST00000575207 KIAA0408Q6ZU52 694 aa15.03■□□□□ -0
VPS53-218ENST00000575207 PLPP5Q8NEB5 264 aa15.03■□□□□ -0
VPS53-218ENST00000575207 NTNG2Q96CW9 530 aa15.03■□□□□ -0
VPS53-218ENST00000575207 CAPZA3Q96KX2 299 aa15.03■□□□□ -0
VPS53-218ENST00000575207 RBM24Q9BX46 236 aaKnown RBP15.03■□□□□ -0
VPS53-218ENST00000575207 ESRP2Q9H6T0 727 aaKnown RBP15.03■□□□□ -0
VPS53-218ENST00000575207 SYNPO2LQ9H987 977 aa15.03■□□□□ -0
VPS53-218ENST00000575207 UBP1Q9NZI7 540 aa15.03■□□□□ -0
VPS53-218ENST00000575207 ARMCX1Q9P291 453 aa15.03■□□□□ -0
VPS53-218ENST00000575207 SPRR3Q9UBC9 169 aa15.03■□□□□ -0
VPS53-218ENST00000575207 DRG1Q9Y295 367 aaKnown RBP15.03■□□□□ -0
VPS53-218ENST00000575207 PCDHA3Q9Y5H8 950 aa15.03■□□□□ -0
VPS53-218ENST00000575207 H0YIG0 161 aa15.02■□□□□ -0
VPS53-218ENST00000575207 HSP90AA1P07900 732 aaKnown RBP15.02■□□□□ -0
VPS53-218ENST00000575207 CELA3AP09093 270 aa15.02■□□□□ -0
VPS53-218ENST00000575207 SRD5A1P18405 259 aa15.02■□□□□ -0
VPS53-218ENST00000575207 WNT3P56703 355 aa15.02■□□□□ -0
VPS53-218ENST00000575207 SLC10A1Q14973 349 aa15.02■□□□□ -0
VPS53-218ENST00000575207 TPD52L1Q16890 204 aaPredicted RBP15.02■□□□□ -0
VPS53-218ENST00000575207 LACC1Q8IV20 430 aa15.02■□□□□ -0
VPS53-218ENST00000575207 TMEM156Q8N614 296 aa15.02■□□□□ -0
VPS53-218ENST00000575207 FAF2Q96CS3 445 aa15.02■□□□□ -0
VPS53-218ENST00000575207 PIK3IP1Q96FE7 263 aa15.02■□□□□ -0
VPS53-218ENST00000575207 IL17FQ96PD4 163 aa15.02■□□□□ -0
VPS53-218ENST00000575207 LDAHQ9H6V9 325 aa15.02■□□□□ -0
VPS53-218ENST00000575207 GALNT8Q9NY28 637 aa15.02■□□□□ -0
VPS53-218ENST00000575207 PSD3Q9NYI0 1048 aa15.02■□□□□ -0
VPS53-218ENST00000575207 GOLGA6L4A6NEF3 574 aa15.01□□□□□ -0.01
VPS53-218ENST00000575207 AHRRA9YTQ3 701 aa15.01□□□□□ -0.01
VPS53-218ENST00000575207 IL18BPO95998 194 aa15.01□□□□□ -0.01
VPS53-218ENST00000575207 CTSSP25774 331 aa15.01□□□□□ -0.01
VPS53-218ENST00000575207 OPRM1P35372 400 aa15.01□□□□□ -0.01
VPS53-218ENST00000575207 MC3RP41968 323 aa15.01□□□□□ -0.01
VPS53-218ENST00000575207 XCR1P46094 333 aa15.01□□□□□ -0.01
VPS53-218ENST00000575207 AVPR1BP47901 424 aa15.01□□□□□ -0.01
VPS53-218ENST00000575207 ABRAXAS2Q15018 415 aa15.01□□□□□ -0.01
VPS53-218ENST00000575207 NSDHLQ15738 373 aa15.01□□□□□ -0.01
Retrieved 100 of 20,778 RNA–protein pairs in 80.9 ms