RNA–Protein interactions for RNA: ENST00000572334.6

VPS53-213, Transcript of VPS53, GARP complex subunit, humanhuman

TSL 5

Gene VPS53, Length 561 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus .

Download Table  
RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS53-213ENST00000572334 PTGFRNQ9P2B2 879 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 TRPC4Q9UBN4 977 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 TAC3Q9UHF0 121 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 MRFAP1Q9Y605 127 aa6.37□□□□□ -1.39
VPS53-213ENST00000572334 HIVEP1P15822 2718 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 A0A0A6YYC8 382 aaPredicted RBP6.36□□□□□ -1.39
VPS53-213ENST00000572334 IGHV3-20A0A0C4DH32 117 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 FAM237BA0A1B0GVD1 139 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 OR2W5A6NFC9 320 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 H3BMM5 538 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 I3L1I5 382 aaPredicted RBP6.36□□□□□ -1.39
VPS53-213ENST00000572334 MAN1A2O60476 641 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 PHF2O75151 1096 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 USP1O94782 785 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 BMP10O95393 424 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 POU3F2P20265 443 aaPredicted RBP6.36□□□□□ -1.39
VPS53-213ENST00000572334 CHRM3P20309 590 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 TNFRSF8P28908 595 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 CXCR5P32302 372 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 RPA3P35244 121 aaPredicted RBP6.36□□□□□ -1.39
VPS53-213ENST00000572334 SLC1A2P43004 574 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 FAM53BQ14153 422 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 ELOAQ14241 798 aaKnown RBP6.36□□□□□ -1.39
VPS53-213ENST00000572334 RNF187Q5TA31 235 aaPredicted RBP6.36□□□□□ -1.39
VPS53-213ENST00000572334 SP5Q6BEB4 398 aaPredicted RBP6.36□□□□□ -1.39
VPS53-213ENST00000572334 ZNF470Q6ECI4 717 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 MRNIPQ6NTE8 343 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 NEPROQ6NW34 567 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 H3F3CQ6NXT2 135 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 C4orf22Q6V702 233 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 FJX1Q86VR8 437 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 BCORP1Q8N888 145 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 CD200R1Q8TD46 325 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 MAGEC3Q8TD91 643 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 ITLN2Q8WWU7 325 aaPredicted RBP6.36□□□□□ -1.39
VPS53-213ENST00000572334 TM4SF19Q96DZ7 209 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 MMABQ96EY8 250 aaPredicted RBP6.36□□□□□ -1.39
VPS53-213ENST00000572334 SIGLEC10Q96LC7 697 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 FOPNLQ96NB1 174 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 GPR21Q99679 349 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 MACROD1Q9BQ69 325 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 TSGA10Q9BZW7 698 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 UNKQ9C0B0 810 aaKnown RBP6.36□□□□□ -1.39
VPS53-213ENST00000572334 VN1R1Q9GZP7 353 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 RNF32Q9H0A6 362 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 MKKSQ9NPJ1 570 aaPredicted RBP6.36□□□□□ -1.39
VPS53-213ENST00000572334 FBXO6Q9NRD1 293 aaPredicted RBP6.36□□□□□ -1.39
VPS53-213ENST00000572334 HOMER3Q9NSC5 361 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 OLAHQ9NV23 265 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 C14orf105Q9NVL8 296 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 INTS10Q9NVR2 710 aaKnown RBP6.36□□□□□ -1.39
VPS53-213ENST00000572334 CPSF2Q9P2I0 782 aaKnown RBP6.36□□□□□ -1.39
VPS53-213ENST00000572334 KLHL42Q9P2K6 505 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 PCYOX1Q9UHG3 505 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 ADAMTS6Q9UKP5 1117 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 ENTPD4Q9Y227 616 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 DHRS7Q9Y394 339 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 PHF3Q92576 2039 aaKnown RBP6.36□□□□□ -1.39
VPS53-213ENST00000572334 SPG11Q96JI7 2443 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 C2CD3Q4AC94 2353 aa6.36□□□□□ -1.39
VPS53-213ENST00000572334 FREM3P0C091 2139 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 ANKRD17O75179 2603 aaKnown RBP6.35□□□□□ -1.39
VPS53-213ENST00000572334 KCNE1BA0A087WTH5 132 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 TRAV17A0A0B4J275 112 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 CTAGE15A4D2H0 777 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 H7BY64 318 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 SMAPO00193 183 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 AP3B1O00203 1094 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 LCMT2O60294 686 aaKnown RBP6.35□□□□□ -1.39
VPS53-213ENST00000572334 DNAJB6O75190 326 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 VPS26AO75436 327 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 SEC24DO94855 1032 aaPredicted RBP6.35□□□□□ -1.39
VPS53-213ENST00000572334 HAUS5O94927 633 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 NSA2O95478 260 aaKnown RBP6.35□□□□□ -1.39
VPS53-213ENST00000572334 CATP04040 527 aaKnown RBP6.35□□□□□ -1.39
VPS53-213ENST00000572334 HEXBP07686 556 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 MPC1LP0DKB6 136 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 ERVK-10P10266 1014 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 FDXRP22570 491 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 GABRB3P28472 473 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 HSD17B2P37059 387 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 COILP38432 576 aaPredicted RBP6.35□□□□□ -1.39
VPS53-213ENST00000572334 VPS41P49754 854 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 ST13P50502 369 aaKnown RBP6.35□□□□□ -1.39
VPS53-213ENST00000572334 SH3BGRP55822 239 aaPredicted RBP6.35□□□□□ -1.39
VPS53-213ENST00000572334 CSNK1G2P78368 415 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 ARG2P78540 354 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 CCZ1BP86790 482 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 CCZ1P86791 482 aaPredicted RBP6.35□□□□□ -1.39
VPS53-213ENST00000572334 MPP1Q00013 466 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 PMP22Q01453 160 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 GPS1Q13098 491 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 TSTA3Q13630 321 aaPredicted RBP6.35□□□□□ -1.39
VPS53-213ENST00000572334 DHX34Q14147 1143 aaKnown RBP6.35□□□□□ -1.39
VPS53-213ENST00000572334 NAA25Q14CX7 972 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 CDSNQ15517 529 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 INAQ16352 499 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 IRAK1BP1Q5VVH5 260 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 ARMC3Q5W041 872 aa6.35□□□□□ -1.39
VPS53-213ENST00000572334 TMEM214Q6NUQ4 689 aaKnown RBP6.35□□□□□ -1.39
Retrieved 100 of 20,778 RNA–protein pairs in 33.9 ms