RNA–Protein interactions for RNA: ENST00000565354.5

CLN3-217, Transcript of CLN3, battenin, humanhuman

TSL 5

Gene CLN3, Length 759 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-217ENST00000565354 ROPN1Q9HAT0 212 aaPredicted RBP16.49■□□□□ 0.23
CLN3-217ENST00000565354 PRM3Q9NNZ6 103 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 TXLNGQ9NUQ3 528 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 XPR1Q9UBH6 696 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 PILRAQ9UKJ1 303 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 ANGPTL3Q9Y5C1 460 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 PCDHB3Q9Y5E6 796 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 AP1M2Q9Y6Q5 423 aa16.49■□□□□ 0.23
CLN3-217ENST00000565354 SNRNP200O75643 2136 aaKnown RBP16.49■□□□□ 0.23
CLN3-217ENST00000565354 HAT1O14929 419 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 CLGNO14967 610 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 TAPBPO15533 448 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 ZSCAN9O15535 394 aaPredicted RBP16.48■□□□□ 0.23
CLN3-217ENST00000565354 ZNF749O43361 778 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 HCRTR1O43613 425 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 NRP2O60462 931 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 CTSVO60911 334 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 DLGAP3O95886 979 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 KLK3P07288 261 aaPredicted RBP16.48■□□□□ 0.23
CLN3-217ENST00000565354 PRKAR1AP10644 381 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 SLC6A12P48065 614 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 GABRA4P48169 554 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 KCNC1P48547 511 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 RPS15AP62244 130 aaKnown RBP16.48■□□□□ 0.23
CLN3-217ENST00000565354 CDC20Q12834 499 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 CDC16Q13042 620 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 RASA2Q15283 850 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 PFKFB4Q16877 469 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 ZXDCQ2QGD7 858 aaPredicted RBP16.48■□□□□ 0.23
CLN3-217ENST00000565354 PRAMEF17Q5VTA0 474 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 LRRC70Q7Z2Q7 622 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 LCA5Q86VQ0 697 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 PLD3Q8IV08 490 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 APOBEC4Q8WW27 367 aaKnown RBP16.48■□□□□ 0.23
CLN3-217ENST00000565354 NEIL2Q969S2 332 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 ESAMQ96AP7 390 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 ABHD17AQ96GS6 310 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 GPR78Q96P69 363 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 OR4K3Q96R72 315 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 NDC1Q9BTX1 674 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 NLNQ9BYT8 704 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 MRPL46Q9H2W6 279 aaKnown RBP16.48■□□□□ 0.23
CLN3-217ENST00000565354 GPN2Q9H9Y4 310 aaPredicted RBP16.48■□□□□ 0.23
CLN3-217ENST00000565354 OPTCQ9UBM4 332 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 PTBP2Q9UKA9 531 aaKnown RBP16.48■□□□□ 0.23
CLN3-217ENST00000565354 TMCO1Q9UM00 188 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 SRPK3Q9UPE1 567 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 SH2B3Q9UQQ2 575 aa16.48■□□□□ 0.23
CLN3-217ENST00000565354 CACNA1DQ01668 2161 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 A0A1W2PPM1 405 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 H0YGG7 62 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 MAP2K7O14733 419 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 H2AFYO75367 372 aaKnown RBP16.47■□□□□ 0.23
CLN3-217ENST00000565354 GNAZP19086 355 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 TAC1P20366 129 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 GGT5P36269 586 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 CD97P48960 835 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 ARSFP54793 590 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 ARF3P61204 181 aaPredicted RBP16.47■□□□□ 0.23
CLN3-217ENST00000565354 CSNK1G2P78368 415 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 MAP7Q14244 749 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 GRM7Q14831 915 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 KRT71Q3SY84 523 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 LACTB2Q53H82 288 aaPredicted RBP16.47■□□□□ 0.23
CLN3-217ENST00000565354 WASHC2DQ5SRD0 308 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 FRMPD2BQ6IN97 320 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 FBXO42Q6P3S6 717 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 TIPARPQ7Z3E1 657 aaKnown RBP16.47■□□□□ 0.23
CLN3-217ENST00000565354 ATCAYQ86WG3 371 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 KLHDC8AQ8IYD2 350 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 MR1Q95460 341 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 KIAA1143Q96AT1 154 aaPredicted RBP16.47■□□□□ 0.23
CLN3-217ENST00000565354 MRPL57Q9BQC6 102 aaKnown RBP16.47■□□□□ 0.23
CLN3-217ENST00000565354 AIF1LQ9BQI0 150 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 CD244Q9BZW8 370 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 PELI2Q9HAT8 420 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 GPRC5BQ9NZH0 403 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 NDOR1Q9UHB4 597 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 DCDC2Q9UHG0 476 aa16.47■□□□□ 0.23
CLN3-217ENST00000565354 FEZF1A0PJY2 475 aa16.46■□□□□ 0.23
CLN3-217ENST00000565354 CCDC151A5D8V7 595 aa16.46■□□□□ 0.23
CLN3-217ENST00000565354 TXNDC9O14530 226 aa16.46■□□□□ 0.23
CLN3-217ENST00000565354 GLRA3O75311 464 aa16.46■□□□□ 0.23
CLN3-217ENST00000565354 GSTA1P08263 222 aa16.46■□□□□ 0.23
CLN3-217ENST00000565354 ATXN8OSP0DMR3 200 aa16.46■□□□□ 0.23
CLN3-217ENST00000565354 AGXTP21549 392 aa16.46■□□□□ 0.23
CLN3-217ENST00000565354 CXCR2P25025 360 aa16.46■□□□□ 0.23
CLN3-217ENST00000565354 ALDH18A1P54886 795 aaKnown RBP16.46■□□□□ 0.23
CLN3-217ENST00000565354 MEF2AQ02078 507 aaPredicted RBP16.46■□□□□ 0.23
CLN3-217ENST00000565354 KLRB1Q12918 225 aa16.46■□□□□ 0.23
CLN3-217ENST00000565354 SETDB1Q15047 1291 aa16.46■□□□□ 0.23
CLN3-217ENST00000565354 PDK4Q16654 411 aa16.46■□□□□ 0.23
CLN3-217ENST00000565354 FAM214AQ32MH5 1076 aa16.46■□□□□ 0.23
CLN3-217ENST00000565354 CATSPEREQ5SY80 951 aa16.46■□□□□ 0.23
CLN3-217ENST00000565354 NXPE4Q6UWF7 544 aa16.46■□□□□ 0.23
CLN3-217ENST00000565354 CYP4X1Q8N118 509 aa16.46■□□□□ 0.23
CLN3-217ENST00000565354 CSNK1A1LQ8N752 337 aa16.46■□□□□ 0.23
CLN3-217ENST00000565354 PTGR2Q8N8N7 351 aaPredicted RBP16.46■□□□□ 0.23
CLN3-217ENST00000565354 MZB1Q8WU39 189 aa16.46■□□□□ 0.23
CLN3-217ENST00000565354 THAP11Q96EK4 314 aa16.46■□□□□ 0.23
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms