RNA–Protein interactions for RNA: ENST00000565023.1

VPS9D1-204, Transcript of VPS9 domain containing 1, humanhuman

APPRIS ALT2 TSL 5

Gene VPS9D1, Length 775 nt, Biotype protein coding, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
VPS9D1-204ENST00000565023 CDC7O00311 574 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 SOCS6O14544 535 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 ZGLP1P0C6A0 271 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 PHBP35232 272 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 GP5P40197 560 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 TAS2R39P59534 338 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 SNRPNP63162 240 aaKnown RBP12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 CSNK1G2P78368 415 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 FOXK1P85037 733 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 EEF1A2Q05639 463 aaKnown RBP12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 NAB1Q13506 487 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 TUBB8Q3ZCM7 444 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 PRR30Q53SZ7 412 aaPredicted RBP12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 TEX35Q5T0J7 233 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 UBAP2Q5T6F2 1119 aaKnown RBP12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 CAPN13Q6MZZ7 669 aaPredicted RBP12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 PRMT9Q6P2P2 845 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 CTAGE3PQ8IX95 158 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 EFCAB3Q8N7B9 438 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 RBBP8Q99708 897 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 EGFL8Q99944 293 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 SLC26A1Q9H2B4 701 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 WDR54Q9H977 334 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 MLXIPLQ9NP71 852 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 SLAMF7Q9NQ25 335 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 TXNDC16Q9P2K2 825 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 NXT1Q9UKK6 140 aaKnown RBP12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 CDC14AQ9UNH5 594 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 HS3ST3B1Q9Y662 390 aa12.96□□□□□ -0.33
VPS9D1-204ENST00000565023 SPTAN1Q13813 2472 aaKnown RBP12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 PRPF4O43172 522 aaKnown RBP eCLIP12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 FOXS1O43638 330 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 ONECUT2O95948 504 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 IGHEP01854 428 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 SERPIND1P05546 499 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 ZNF37AP17032 561 aaPredicted RBP12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 IL1RNP18510 177 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 DEKP35659 375 aaKnown RBP12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 SLC12A2P55011 1212 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 RPS15AP62244 130 aaKnown RBP12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 MYBPC3Q14896 1274 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 SLMAPQ14BN4 828 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 NDUFA9Q16795 377 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 GRTP1Q5TC63 336 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 MFSD4BQ5TF39 518 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 VWA5B1Q5TIE3 1220 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 KIRREL2Q6UWL6 708 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 LCTLQ6UWM7 567 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 PRSS41Q7RTY9 318 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 VN1R4Q7Z5H5 301 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 LAPTM4BQ86VI4 370 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 RBMXL3Q8N7X1 1067 aaKnown RBP12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 PPM1NQ8N819 430 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 OR9A4Q8NGU2 314 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 CPT1CQ8TCG5 803 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 PDLIM5Q96HC4 596 aaKnown RBP12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 CYTH2Q99418 400 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 GPR22Q99680 433 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 DRC3Q9H069 523 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 PCBD2Q9H0N5 130 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 ACSS3Q9H6R3 686 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 ZNF552Q9H707 407 aaPredicted RBP12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 CAB39LQ9H9S4 337 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 SEMA3GQ9NS98 782 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 MTO1Q9Y2Z2 717 aaKnown RBP12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 MYO9AB2RTY4 2548 aa12.95□□□□□ -0.34
VPS9D1-204ENST00000565023 VSTM2BA6NLU5 285 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 TXNDC9O14530 226 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 MAP2K7O14733 419 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 LCMT2O60294 686 aaKnown RBP12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 ACSL3O95573 720 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 ALPPP05187 535 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 HEXBP07686 556 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 UQCRHP07919 91 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 ACPPP15309 386 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 CCND1P24385 295 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 TNFRSF8P28908 595 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 SPRP35270 261 aaPredicted RBP12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 GRK3P35626 688 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 BCL6P41182 706 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 AVPR1BP47901 424 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 CD97P48960 835 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 EMP2P54851 167 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 POU4F1Q01851 419 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 AIMP2Q13155 320 aaKnown RBP12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 DSG2Q14126 1118 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 EFTUD2Q15029 972 aaKnown RBP eCLIP12.94□□□□□ -0.341e-6■■□□□ 14.4
VPS9D1-204ENST00000565023 ZXDCQ2QGD7 858 aaPredicted RBP12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 IRAK1BP1Q5VVH5 260 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 GARNL3Q5VVW2 1013 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 SLC6A19Q695T7 634 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 JMJD6Q6NYC1 403 aaPredicted RBP12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 FRA10AC1Q70Z53 315 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 ATCAYQ86WG3 371 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 CEP97Q8IW35 865 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 SHISA5Q8N114 240 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 SPATA6LQ8N4H0 392 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 AMER3Q8N944 861 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 OR11G2Q8NGC1 345 aa12.94□□□□□ -0.34
VPS9D1-204ENST00000565023 ANKRD49Q8WVL7 239 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 24.4 ms