RNA–Protein interactions for RNA: ENST00000563874.5

CLN3-210, Transcript of CLN3, battenin, humanhuman

TSL 2

Gene CLN3, Length 3,081 nt, Biotype retained intron, Subcellular localisation Endoplasmic reticulum .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLN3-210ENST00000563874 TCEA1P23193 301 aaKnown RBP12.76□□□□□ -0.37
CLN3-210ENST00000563874 FLT3LGP49771 235 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 ZNF157P51786 506 aaPredicted RBP12.76□□□□□ -0.37
CLN3-210ENST00000563874 DGKEP52429 567 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 KCNJ10P78508 379 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 ELP6Q0PNE2 266 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 DDX59Q5T1V6 619 aaKnown RBP eCLIP12.76□□□□□ -0.37
CLN3-210ENST00000563874 DEPDC1Q5TB30 811 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 SLC5A8Q8N695 610 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 KIAA1958Q8N8K9 716 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 HIST1H2AHQ96KK5 128 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 HIST1H2AJQ99878 128 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 H2AFJQ9BTM1 129 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 SLC7A5P2Q9GIP4 190 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 MARCH7Q9H992 704 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 TRPM5Q9NZQ8 1165 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 RAPGEFL1Q9UHV5 662 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 CD84Q9UIB8 345 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 PSORS1C1Q9UIG5 152 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 SUV39H1O43463 412 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 SSX4O60224 188 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 PTHP01270 115 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 HMGA1P17096 107 aaKnown RBP12.76□□□□□ -0.37
CLN3-210ENST00000563874 HOXB6P17509 224 aaKnown RBP12.76□□□□□ -0.37
CLN3-210ENST00000563874 PRPS1L1P21108 318 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 FKBP1BP68106 108 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 CDKN3Q16667 212 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 LRIT3Q3SXY7 679 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 SMUG1Q53HV7 270 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 FAM26DQ5JW98 314 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 RGMBQ6NW40 437 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 SERPINA13PQ6UXR4 307 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 TPGS1Q6ZTW0 290 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 MICAL3Q7RTP6 2002 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 ZNF675Q8TD23 568 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 ASIC4Q96FT7 647 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 SP140LQ9H930 580 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 ITGB1BP2Q9UKP3 347 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 SNX8Q9Y5X2 465 aa12.76□□□□□ -0.37
CLN3-210ENST00000563874 A6NL46 340 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 NSG1P42857 185 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 AP1S1P61966 158 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 CDC20Q12834 499 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 MTAPQ13126 283 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 TSEN54Q7Z6J9 526 aaKnown RBP12.75□□□□□ -0.37
CLN3-210ENST00000563874 CACTIN-AS1Q8N1I8 211 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 DNAJC22Q8N4W6 341 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 SLC43A3Q8NBI5 491 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 COPS8Q99627 209 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 OR51B4Q9Y5P0 310 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 TNFRSF11BO00300 401 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 PCDH7O60245 1069 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 CD22P20273 847 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 S100A5P33763 92 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 TUBA1BP68363 451 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 CRHR2Q13324 411 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 GAB1Q13480 694 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 LRRC66Q68CR7 880 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 TRAF7Q6Q0C0 670 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 USP43Q70EL4 1123 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 TUBA1AQ71U36 451 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 LRRC70Q7Z2Q7 622 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 NAGSQ8N159 534 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 METTL4Q8N3J2 472 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 AMER2Q8N7J2 671 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 CELF2-AS1Q8N7Q2 184 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 ATL1Q8WXF7 558 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 FOXJ1Q92949 421 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 NIPSNAP1Q9BPW8 284 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 C14orf119Q9NWQ9 140 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 CLEC4EQ9ULY5 219 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 CLCA1A8K7I4 914 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 ASNA1O43681 348 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 ELNP15502 786 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 IRF8Q02556 426 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 ZNF181Q2M3W8 571 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 ARMCX4Q5H9R4 360 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 CST9Q5W186 159 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 ERICH5Q6P6B1 374 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 RAB11FIP1Q6WKZ4 1283 aaPredicted RBP12.75□□□□□ -0.37
CLN3-210ENST00000563874 SLC46A3Q7Z3Q1 461 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 NANOGNBQ7Z5D8 188 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 LACC1Q8IV20 430 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 NLGN4XQ8N0W4 816 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 STX19Q8N4C7 294 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 GPR156Q8NFN8 814 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 CSGALNACT1Q8TDX6 532 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 HHIPQ96QV1 700 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 KLF16Q9BXK1 252 aaPredicted RBP12.75□□□□□ -0.37
CLN3-210ENST00000563874 TMEM161AQ9NX61 479 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 SPASTQ9UBP0 616 aa12.75□□□□□ -0.37
CLN3-210ENST00000563874 RPLP0P05388 317 aaKnown RBP12.74□□□□□ -0.37
CLN3-210ENST00000563874 CDK1P06493 297 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 ADORA3P0DMS8 318 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 HOXD11P31277 338 aaPredicted RBP12.74□□□□□ -0.37
CLN3-210ENST00000563874 GGT2P36268 569 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 CDH12P55289 794 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 ST3GAL4Q11206 333 aa12.74□□□□□ -0.37
CLN3-210ENST00000563874 TBCEQ15813 527 aaPredicted RBP12.74□□□□□ -0.37
CLN3-210ENST00000563874 HKDC1Q2TB90 917 aa12.74□□□□□ -0.37
Retrieved 100 of 20,778 RNA–protein pairs in 40.1 ms