RNA–Protein interactions for RNA: ENST00000561381.5

USP3-220, Transcript of ubiquitin specific peptidase 3, humanhuman

TSL 2

Gene USP3, Length 979 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
USP3-220ENST00000561381 UQCRHP07919 91 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 MLNP12872 115 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 ENO3P13929 434 aaPredicted RBP11.01□□□□□ -0.65
USP3-220ENST00000561381 FDXRP22570 491 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 MAGEA3P43357 314 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 ST13P50502 369 aaKnown RBP11.01□□□□□ -0.65
USP3-220ENST00000561381 CCZ1BP86790 482 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 CCZ1P86791 482 aaPredicted RBP11.01□□□□□ -0.65
USP3-220ENST00000561381 TIAL1Q01085 375 aaKnown RBP eCLIP11.01□□□□□ -0.65
USP3-220ENST00000561381 RELAQ04206 551 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 FAM53BQ14153 422 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 LONRF1Q17RB8 773 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 ARMC3Q5W041 872 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 CRYBG3Q68DQ2 2970 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 HIBCHQ6NVY1 386 aaPredicted RBP11.01□□□□□ -0.65
USP3-220ENST00000561381 RIPOR1Q6ZS17 1223 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 LANCL3Q6ZV70 420 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 UBE2R2Q712K3 238 aaPredicted RBP11.01□□□□□ -0.65
USP3-220ENST00000561381 LRRC8AQ8IWT6 810 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 NR4A3Q92570 626 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 SIGLEC10Q96LC7 697 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 CCDC138Q96M89 665 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 NDNQ99608 321 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 AARSD1Q9BTE6 412 aaKnown RBP11.01□□□□□ -0.65
USP3-220ENST00000561381 CSTF2TQ9H0L4 616 aaKnown RBP eCLIP11.01□□□□□ -0.65
USP3-220ENST00000561381 XAB2Q9HCS7 855 aaKnown RBP11.01□□□□□ -0.65
USP3-220ENST00000561381 HCN3Q9P1Z3 774 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 ADAMTS6Q9UKP5 1117 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 MAD1L1Q9Y6D9 718 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 CPAMD8Q8IZJ3 1885 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 SCN2AQ99250 2005 aa11.01□□□□□ -0.65
USP3-220ENST00000561381 CELSR2Q9HCU4 2923 aa11□□□□□ -0.65
USP3-220ENST00000561381 FEZF1A0PJY2 475 aa11□□□□□ -0.65
USP3-220ENST00000561381 SGK494L7N484 410 aa11□□□□□ -0.65
USP3-220ENST00000561381 TXNDC9O14530 226 aa11□□□□□ -0.65
USP3-220ENST00000561381 SEC24DO94855 1032 aaPredicted RBP11□□□□□ -0.65
USP3-220ENST00000561381 C8orf89P0DMQ9 161 aa11□□□□□ -0.65
USP3-220ENST00000561381 PRF1P14222 555 aa11□□□□□ -0.65
USP3-220ENST00000561381 IL1RNP18510 177 aa11□□□□□ -0.65
USP3-220ENST00000561381 MST1P26927 711 aa11□□□□□ -0.65
USP3-220ENST00000561381 COILP38432 576 aaPredicted RBP11□□□□□ -0.65
USP3-220ENST00000561381 AVPR1BP47901 424 aa11□□□□□ -0.65
USP3-220ENST00000561381 PER3P56645 1201 aa11□□□□□ -0.65
USP3-220ENST00000561381 TBPL1P62380 186 aa11□□□□□ -0.65
USP3-220ENST00000561381 CSNK1G2P78368 415 aa11□□□□□ -0.65
USP3-220ENST00000561381 NDUFA9Q16795 377 aa11□□□□□ -0.65
USP3-220ENST00000561381 MINDY4Q4G0A6 757 aa11□□□□□ -0.65
USP3-220ENST00000561381 HSP90AA5PQ58FG0 334 aa11□□□□□ -0.65
USP3-220ENST00000561381 MFSD4BQ5TF39 518 aa11□□□□□ -0.65
USP3-220ENST00000561381 CCDC137Q6PK04 289 aaKnown RBP11□□□□□ -0.65
USP3-220ENST00000561381 RASGEF1CQ8N431 466 aa11□□□□□ -0.65
USP3-220ENST00000561381 NAT8LQ8N9F0 302 aa11□□□□□ -0.65
USP3-220ENST00000561381 ZCCHC10Q8TBK6 192 aa11□□□□□ -0.65
USP3-220ENST00000561381 EEF1AKMT1Q8WVE0 214 aa11□□□□□ -0.65
USP3-220ENST00000561381 CYTH2Q99418 400 aa11□□□□□ -0.65
USP3-220ENST00000561381 EBNA1BP2Q99848 306 aaKnown RBP11□□□□□ -0.65
USP3-220ENST00000561381 ATG10Q9H0Y0 220 aa11□□□□□ -0.65
USP3-220ENST00000561381 CCDC177Q9NQR7 707 aaPredicted RBP11□□□□□ -0.65
USP3-220ENST00000561381 IARS2Q9NSE4 1012 aaKnown RBP11□□□□□ -0.65
USP3-220ENST00000561381 TMEM184CQ9NVA4 438 aa11□□□□□ -0.65
USP3-220ENST00000561381 STMN3Q9NZ72 180 aa11□□□□□ -0.65
USP3-220ENST00000561381 PDE10AQ9Y233 779 aa11□□□□□ -0.65
USP3-220ENST00000561381 PPP2R2CQ9Y2T4 447 aa11□□□□□ -0.65
USP3-220ENST00000561381 MYO9AB2RTY4 2548 aa11□□□□□ -0.65
USP3-220ENST00000561381 ARHGAP10A1A4S6 786 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 A8MUI8 341 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 H0YIG0 161 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 LCMT2O60294 686 aaKnown RBP10.99□□□□□ -0.65
USP3-220ENST00000561381 BANF1O75531 89 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 NSA2O95478 260 aaKnown RBP10.99□□□□□ -0.65
USP3-220ENST00000561381 GABRB3P28472 473 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 BCL6P41182 706 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 XCR1P46094 333 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 PGGT1BP53609 377 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 PMP22Q01453 160 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 ZNF33BQ06732 778 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 CYP1B1Q16678 543 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 ZXDCQ2QGD7 858 aaPredicted RBP10.99□□□□□ -0.65
USP3-220ENST00000561381 RBM20Q5T481 1227 aaKnown RBP10.99□□□□□ -0.65
USP3-220ENST00000561381 ABHD17BQ5VST6 288 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 FCRLBQ6BAA4 426 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 TMEM214Q6NUQ4 689 aaKnown RBP10.99□□□□□ -0.65
USP3-220ENST00000561381 GFRALQ6UXV0 394 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 CPEB2Q7Z5Q1 589 aaKnown RBP10.99□□□□□ -0.65
USP3-220ENST00000561381 PDSS2Q86YH6 399 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 TICAM1Q8IUC6 712 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 SRRM1Q8IYB3 904 aaKnown RBP10.99□□□□□ -0.65
USP3-220ENST00000561381 SERBP1Q8NC51 408 aaKnown RBP eCLIP10.99□□□□□ -0.65
USP3-220ENST00000561381 KCT2Q8NC54 265 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 OR51Q1Q8NH59 317 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 CALML6Q8TD86 181 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 METTL21AQ8WXB1 218 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 ALKBH8Q96BT7 664 aaKnown RBP10.99□□□□□ -0.65
USP3-220ENST00000561381 TUBB6Q9BUF5 446 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 SLC17A6Q9P2U8 582 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 CENPEQ02224 2701 aa10.99□□□□□ -0.65
USP3-220ENST00000561381 KCNE1BA0A087WTH5 132 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 A0A1B0GUH1 482 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 OR5H15A6NDH6 313 aa10.98□□□□□ -0.65
USP3-220ENST00000561381 ZNF860A6NHJ4 632 aa10.98□□□□□ -0.65
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms