RNA–Protein interactions for RNA: ENST00000560467.1

LDLR-212, Transcript of low density lipoprotein receptor, humanhuman

TSL 3

Gene LDLR, Length 928 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-212ENST00000560467 MYO9AB2RTY4 2548 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 PRR19A6NJB7 356 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 TRPC5OSA6NMA1 111 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 K7EM74 188 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 EDF1O60869 148 aaKnown RBP11.34□□□□□ -0.59
LDLR-212ENST00000560467 STK17BO94768 372 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 TGDSO95455 350 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 GNAZP19086 355 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 BDKRB1P46663 353 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 HSPA7P48741 367 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 RAB28P51157 221 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 CCNG1P51959 295 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 SEC24CP53992 1094 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 PNLIPRP1P54315 467 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 HHEXQ03014 270 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 GABPB1Q06547 395 aaPredicted RBP11.34□□□□□ -0.59
LDLR-212ENST00000560467 NAE1Q13564 534 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 GTF2H2Q13888 395 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 PLCL1Q15111 1095 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 HIST2H2ACQ16777 129 aaPredicted RBP11.34□□□□□ -0.59
LDLR-212ENST00000560467 HIST2H2BCQ6DN03 193 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 HIST2H2AA3Q6FI13 130 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 GTF2H2CQ6P1K8 395 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 IYDQ6PHW0 289 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 CEACAM20Q6UY09 585 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 FRMD7Q6ZUT3 714 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 GPRIN3Q6ZVF9 776 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 ARHGAP22Q7Z5H3 698 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 MILR1Q7Z6M3 343 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 FAM26EQ8N5C1 309 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 TBC1D19Q8N5T2 526 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 OR5AR1Q8NGP9 310 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 PIWIL2Q8TC59 973 aaKnown RBP11.34□□□□□ -0.59
LDLR-212ENST00000560467 TRPC4APQ8TEL6 797 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 UBTD2Q8WUN7 234 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 APOBEC4Q8WW27 367 aaKnown RBP11.34□□□□□ -0.59
LDLR-212ENST00000560467 SMPDL3AQ92484 453 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 NCSTNQ92542 709 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 SLC22A18Q96BI1 424 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 RMDN2Q96LZ7 410 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 CCT8L2Q96SF2 557 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 PKP4Q99569 1192 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 CCT7Q99832 543 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 C1QTNF3Q9BXJ4 246 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 ATG10Q9H0Y0 220 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 IPPKQ9H8X2 491 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 ACTR8Q9H981 624 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 SEMA4BQ9NPR2 832 aaPredicted RBP11.34□□□□□ -0.59
LDLR-212ENST00000560467 POT1Q9NUX5 634 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 STOX2Q9P2F5 926 aaPredicted RBP11.34□□□□□ -0.59
LDLR-212ENST00000560467 TP53TG5Q9Y2B4 290 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 CFAP20Q9Y6A4 193 aaKnown RBP11.34□□□□□ -0.59
LDLR-212ENST00000560467 UNC79Q9P2D8 2635 aa11.34□□□□□ -0.59
LDLR-212ENST00000560467 BLACEA4D250 179 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 OR52A4PA6NMU1 304 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 SNNO75324 88 aaPredicted RBP11.33□□□□□ -0.6
LDLR-212ENST00000560467 CCNDBP1O95273 360 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 SIX3O95343 332 aaPredicted RBP11.33□□□□□ -0.6
LDLR-212ENST00000560467 DLGAP3O95886 979 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 SLC16A8O95907 504 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 XRCC1P18887 633 aaPredicted RBP11.33□□□□□ -0.6
LDLR-212ENST00000560467 F8A1P23610 371 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 STAT5AP42229 794 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 ABHD18Q0P651 414 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 PTCHD3Q3KNS1 767 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 UNC50Q53HI1 259 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 PAGE2BQ5JRK9 111 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 WDR74Q6RFH5 385 aaPredicted RBP11.33□□□□□ -0.6
LDLR-212ENST00000560467 THOC6Q86W42 341 aaKnown RBP11.33□□□□□ -0.6
LDLR-212ENST00000560467 MYLK4Q86YV6 388 aaPredicted RBP11.33□□□□□ -0.6
LDLR-212ENST00000560467 CLYBLQ8N0X4 340 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 ZNF483Q8TF39 744 aaPredicted RBP11.33□□□□□ -0.6
LDLR-212ENST00000560467 DLG3Q92796 817 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 MIB2Q96AX9 1013 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 ZNF317Q96PQ6 595 aaPredicted RBP11.33□□□□□ -0.6
LDLR-212ENST00000560467 PSMG3-AS1Q96PY0 264 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 ELAC2Q9BQ52 826 aaKnown RBP11.33□□□□□ -0.6
LDLR-212ENST00000560467 SRMSQ9H3Y6 488 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 KIR3DX1Q9H7L2 352 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 NOL11Q9H8H0 719 aaKnown RBP11.33□□□□□ -0.6
LDLR-212ENST00000560467 ABCF3Q9NUQ8 709 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 GPRC5BQ9NZH0 403 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 OR6C2Q9NZP2 312 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 KLHL14Q9P2G3 628 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 CPNE7Q9UBL6 633 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 PCTPQ9UKL6 214 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 WDR37Q9Y2I8 494 aa11.33□□□□□ -0.6
LDLR-212ENST00000560467 TMEM184BQ9Y519 407 aaPredicted RBP11.33□□□□□ -0.6
LDLR-212ENST00000560467 A6NCN8 305 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 E2F3O00716 465 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 MAP3K7O43318 606 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 CLDN9O95484 217 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 ENO1P06733 434 aaKnown RBP11.32□□□□□ -0.6
LDLR-212ENST00000560467 RPS17P08708 135 aaKnown RBP11.32□□□□□ -0.6
LDLR-212ENST00000560467 EBLN1P0CF75 366 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 KITP10721 976 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 ZNF28P17035 718 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 TCN2P20062 427 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 CXCR2P25025 360 aa11.32□□□□□ -0.6
LDLR-212ENST00000560467 AGTR2P50052 363 aa11.32□□□□□ -0.6
Retrieved 100 of 20,778 RNA–protein pairs in 65.5 ms