RNA–Protein interactions for RNA: ENST00000559340.1

LDLR-210, Transcript of low density lipoprotein receptor, humanhuman

TSL 5

Gene LDLR, Length 605 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LDLR-210ENST00000559340 EPB41L3Q9Y2J2 1087 aaPredicted RBP8.85□□□□□ -0.99
LDLR-210ENST00000559340 TSC22D4Q9Y3Q8 395 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 LOXL2Q9Y4K0 774 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 ADAMTS20P59510 1910 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 CCDC88CQ9P219 2028 aa8.85□□□□□ -0.99
LDLR-210ENST00000559340 LRRC14BA6NHZ5 514 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 TMEM150CB9EJG8 249 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 PLD2O14939 933 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 ZSCAN9O15535 394 aaPredicted RBP8.84□□□□□ -0.99
LDLR-210ENST00000559340 ESRRBO95718 433 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 HSPA4LO95757 839 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 CHEK2O96017 543 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 SLC35G6P0C7Q6 338 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 FGF3P11487 239 aaPredicted RBP8.84□□□□□ -0.99
LDLR-210ENST00000559340 CHN1P15882 459 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 HMOX2P30519 316 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 SCTRP47872 440 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 ARSFP54793 590 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 EMP3P54852 163 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 WDR4P57081 412 aaKnown RBP8.84□□□□□ -0.99
LDLR-210ENST00000559340 TGM3Q08188 693 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 FOXC1Q12948 553 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 TUBB3Q13509 450 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 PWP1Q13610 501 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 E2F2Q14209 437 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 SLBPQ14493 270 aaKnown RBP eCLIP8.84□□□□□ -0.99
LDLR-210ENST00000559340 GRM7Q14831 915 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 CHI3L2Q15782 390 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 ASPGQ86U10 573 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 PPP1R3BQ86XI6 285 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 FAM20CQ8IXL6 584 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 SRFBP1Q8NEF9 429 aaKnown RBP8.84□□□□□ -0.99
LDLR-210ENST00000559340 METTL6Q8TCB7 284 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 LRRC8CQ8TDW0 803 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 CCT6BQ92526 530 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 PPM1MQ96MI6 270 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 OR6C1Q96RD1 312 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 CENPKQ9BS16 269 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 DDA1Q9BW61 102 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 NRSN2Q9GZP1 204 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 ILKAPQ9H0C8 392 aaPredicted RBP8.84□□□□□ -0.99
LDLR-210ENST00000559340 KLHL25Q9H0H3 589 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 RHBGQ9H310 441 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 GSTO2Q9H4Y5 243 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 ELOVL6Q9H5J4 265 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 MANSC1Q9H8J5 431 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 POLR1BQ9H9Y6 1135 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 ZBTB26Q9HCK0 441 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 MID1IP1Q9NPA3 183 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 GEMIN8Q9NWZ8 242 aaKnown RBP8.84□□□□□ -0.99
LDLR-210ENST00000559340 PSD3Q9NYI0 1048 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 ZFP69BQ9UJL9 534 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 PILRAQ9UKJ1 303 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 KLHL20Q9Y2M5 609 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 PCDHGA8Q9Y5G5 932 aa8.84□□□□□ -0.99
LDLR-210ENST00000559340 A0A088AWK7 358 aa8.83□□□□□ -1
LDLR-210ENST00000559340 IGKV1-8A0A0C4DH67 115 aa8.83□□□□□ -1
LDLR-210ENST00000559340 H0YGG7 62 aa8.83□□□□□ -1
LDLR-210ENST00000559340 H0YIV9 168 aa8.83□□□□□ -1
LDLR-210ENST00000559340 OR7A17O14581 309 aa8.83□□□□□ -1
LDLR-210ENST00000559340 KLF11O14901 512 aa8.83□□□□□ -1
LDLR-210ENST00000559340 HAT1O14929 419 aa8.83□□□□□ -1
LDLR-210ENST00000559340 CTSVO60911 334 aa8.83□□□□□ -1
LDLR-210ENST00000559340 CLEC3AO75596 197 aa8.83□□□□□ -1
LDLR-210ENST00000559340 OR2B3O76000 313 aa8.83□□□□□ -1
LDLR-210ENST00000559340 SERPIND1P05546 499 aa8.83□□□□□ -1
LDLR-210ENST00000559340 FGF4P08620 206 aa8.83□□□□□ -1
LDLR-210ENST00000559340 PIM1P11309 404 aaPredicted RBP8.83□□□□□ -1
LDLR-210ENST00000559340 PCNAP12004 261 aa8.83□□□□□ -1
LDLR-210ENST00000559340 FGF5P12034 268 aa8.83□□□□□ -1
LDLR-210ENST00000559340 HSD3B1P14060 373 aa8.83□□□□□ -1
LDLR-210ENST00000559340 FOLR1P15328 257 aa8.83□□□□□ -1
LDLR-210ENST00000559340 ZNF10P21506 573 aaPredicted RBP8.83□□□□□ -1
LDLR-210ENST00000559340 BGNP21810 368 aa8.83□□□□□ -1
LDLR-210ENST00000559340 PTX3P26022 381 aaPredicted RBP8.83□□□□□ -1
LDLR-210ENST00000559340 HSD3B2P26439 372 aa8.83□□□□□ -1
LDLR-210ENST00000559340 VARSP26640 1264 aaKnown RBP8.83□□□□□ -1
LDLR-210ENST00000559340 CD82P27701 267 aa8.83□□□□□ -1
LDLR-210ENST00000559340 PIK3CBP42338 1070 aa8.83□□□□□ -1
LDLR-210ENST00000559340 SLC1A6P48664 564 aa8.83□□□□□ -1
LDLR-210ENST00000559340 PDX1P52945 283 aa8.83□□□□□ -1
LDLR-210ENST00000559340 MAPK10P53779 464 aa8.83□□□□□ -1
LDLR-210ENST00000559340 VSX2P58304 361 aaPredicted RBP8.83□□□□□ -1
LDLR-210ENST00000559340 ARF3P61204 181 aaPredicted RBP8.83□□□□□ -1
LDLR-210ENST00000559340 ABCE1P61221 599 aaKnown RBP8.83□□□□□ -1
LDLR-210ENST00000559340 STXBP1P61764 594 aaKnown RBP8.83□□□□□ -1
LDLR-210ENST00000559340 TRAF3Q13114 568 aa8.83□□□□□ -1
LDLR-210ENST00000559340 ZIC1Q15915 447 aa8.83□□□□□ -1
LDLR-210ENST00000559340 CPSF6Q16630 551 aaKnown RBP eCLIP8.83□□□□□ -1
LDLR-210ENST00000559340 LARP7Q4G0J3 582 aaKnown RBP eCLIP8.83□□□□□ -1
LDLR-210ENST00000559340 C3orf38Q5JPI3 329 aa8.83□□□□□ -1
LDLR-210ENST00000559340 WASHC2DQ5SRD0 308 aa8.83□□□□□ -1
LDLR-210ENST00000559340 GARNL3Q5VVW2 1013 aa8.83□□□□□ -1
LDLR-210ENST00000559340 CHSY3Q70JA7 882 aa8.83□□□□□ -1
LDLR-210ENST00000559340 LAS2Q8IYD9 372 aa8.83□□□□□ -1
LDLR-210ENST00000559340 CLYBLQ8N0X4 340 aa8.83□□□□□ -1
LDLR-210ENST00000559340 OR4F6Q8NGB9 312 aa8.83□□□□□ -1
LDLR-210ENST00000559340 MDM1Q8TC05 714 aa8.83□□□□□ -1
LDLR-210ENST00000559340 AGAP11Q8TF27 550 aa8.83□□□□□ -1
LDLR-210ENST00000559340 SLC13A3Q8WWT9 602 aa8.83□□□□□ -1
Retrieved 100 of 20,778 RNA–protein pairs in 27.2 ms