RNA–Protein interactions for RNA: ENST00000557302.1

SHMT2-228, Transcript of serine hydroxymethyltransferase 2, humanhuman

TSL 3

Gene SHMT2, Length 457 nt, Biotype retained intron, Subcellular localisation Cytosol .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SHMT2-228ENST00000557302 CLGNO14967 610 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 P2RX6O15547 441 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 OR1F1O43749 312 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 KLK8O60259 260 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 LCMT2O60294 686 aaKnown RBP12.96□□□□□ -0.33
SHMT2-228ENST00000557302 H2AFYO75367 372 aaKnown RBP12.96□□□□□ -0.33
SHMT2-228ENST00000557302 RAB40ALP0C0E4 278 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 PYGBP11216 843 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 KRT15P19012 456 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 F8A1P23610 371 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 CXCR2P25025 360 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 VARSP26640 1264 aaKnown RBP12.96□□□□□ -0.33
SHMT2-228ENST00000557302 ALDH18A1P54886 795 aaKnown RBP12.96□□□□□ -0.33
SHMT2-228ENST00000557302 REEP5Q00765 189 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 MC1RQ01726 317 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 NAA30Q147X3 362 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-228ENST00000557302 SETDB1Q15047 1291 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 PFKFB4Q16877 469 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 GARNL3Q5VVW2 1013 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 ATG9BQ674R7 924 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 LCN10Q6JVE6 187 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 FAM198BQ6UWH4 519 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 SLCO4C1Q6ZQN7 724 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 GPR155Q7Z3F1 870 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 ASPGQ86U10 573 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 LCA5Q86VQ0 697 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 CAMKVQ8NCB2 501 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 OR2W6PQ8NHA6 318 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 SNRNP27Q8WVK2 155 aaKnown RBP12.96□□□□□ -0.33
SHMT2-228ENST00000557302 STARD8Q92502 1023 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 C10orf90Q96M02 699 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 RUFY1Q96T51 708 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 MRPL57Q9BQC6 102 aaKnown RBP12.96□□□□□ -0.33
SHMT2-228ENST00000557302 SARGQ9BW04 601 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 SPNS1Q9H2V7 528 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 MRPL46Q9H2W6 279 aaKnown RBP12.96□□□□□ -0.33
SHMT2-228ENST00000557302 OPTCQ9UBM4 332 aa12.96□□□□□ -0.33
SHMT2-228ENST00000557302 GPN3Q9UHW5 284 aaPredicted RBP12.96□□□□□ -0.33
SHMT2-228ENST00000557302 MRPS18BQ9Y676 258 aaKnown RBP12.96□□□□□ -0.33
SHMT2-228ENST00000557302 GOLGA8RI6L899 631 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 K7EPI3 171 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 TK2O00142 265 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 SMIM24O75264 130 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 STATHP02808 62 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 CAPN1P07384 714 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 SLC35G6P0C7Q6 338 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 C1GALT1C1LP0DN25 315 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 PIM1P11309 404 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-228ENST00000557302 PTPN4P29074 926 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 SCTRP47872 440 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 NCF4Q15080 339 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 NDUFA9Q16795 377 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 NKAIN1Q4KMZ8 207 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 MLIPQ5VWP3 458 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 KRT78Q8N1N4 520 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 RIBC1Q8N443 379 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-228ENST00000557302 METTL27Q8N6F8 245 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-228ENST00000557302 ENDOVQ8N8Q3 282 aaKnown RBP12.95□□□□□ -0.34
SHMT2-228ENST00000557302 ZNF740Q8NDX6 193 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 SLC13A3Q8WWT9 602 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 EHD1Q9H4M9 534 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 ACTL8Q9H568 366 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 IFT80Q9P2H3 777 aaPredicted RBP12.95□□□□□ -0.34
SHMT2-228ENST00000557302 LHX6Q9UPM6 363 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 FARSAQ9Y285 508 aaKnown RBP12.95□□□□□ -0.34
SHMT2-228ENST00000557302 ASB1Q9Y576 335 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 ANGPTL3Q9Y5C1 460 aa12.95□□□□□ -0.34
SHMT2-228ENST00000557302 TNPO3Q9Y5L0 923 aaKnown RBP12.95□□□□□ -0.34
SHMT2-228ENST00000557302 A0A1W2PPM1 405 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 TLDC2A0PJX2 215 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 NKX2-8O15522 239 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 CREG1O75629 220 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 MED26O95402 600 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 SERPIND1P05546 499 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 GSTA1P08263 222 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 CD63P08962 238 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 EPB42P16452 691 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 AHRP35869 848 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 IRF8Q02556 426 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 SLBPQ14493 270 aaKnown RBP eCLIP12.94□□□□□ -0.34
SHMT2-228ENST00000557302 SLC9A5Q14940 896 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 RBBP5Q15291 538 aaKnown RBP12.94□□□□□ -0.34
SHMT2-228ENST00000557302 PCBP2Q15366 365 aaKnown RBP eCLIP12.94□□□□□ -0.34
SHMT2-228ENST00000557302 XKR6Q5GH73 641 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 PRMT9Q6P2P2 845 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 CYP4X1Q8N118 509 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 TEX9Q8N6V9 391 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 PTGR2Q8N8N7 351 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-228ENST00000557302 TM4SF19Q96DZ7 209 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 MVB12AQ96EY5 273 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 PTCD3Q96EY7 689 aaKnown RBP12.94□□□□□ -0.34
SHMT2-228ENST00000557302 MACROD1Q9BQ69 325 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 EFCAB11Q9BUY7 163 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 ROPN1BQ9BZX4 212 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-228ENST00000557302 PITHD1Q9GZP4 211 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-228ENST00000557302 DRC3Q9H069 523 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 ROPN1Q9HAT0 212 aaPredicted RBP12.94□□□□□ -0.34
SHMT2-228ENST00000557302 GEMIN8Q9NWZ8 242 aaKnown RBP12.94□□□□□ -0.34
SHMT2-228ENST00000557302 ZFP69BQ9UJL9 534 aa12.94□□□□□ -0.34
SHMT2-228ENST00000557302 CDC14AQ9UNH5 594 aa12.94□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 32.3 ms