RNA–Protein interactions for RNA: ENST00000556768.5

SCFD1-222, Transcript of sec1 family domain containing 1, humanhuman

TSL 1 (best)

Gene SCFD1, Length 1,829 nt, Biotype nonsense mediated decay, Subcellular localisation Cytoplasm, Cytosol, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SCFD1-222ENST00000556768 IGFBP7Q16270 282 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 RBBP7Q16576 425 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 NKG7Q16617 165 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 SPRED3Q2MJR0 410 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 AGAP7PQ5VUJ5 663 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 FRMPD2BQ6IN97 320 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 FBXO42Q6P3S6 717 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 ZNF549Q6P9A3 640 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 RNF44Q7L0R7 432 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 PIWIL4Q7Z3Z4 852 aaKnown RBP6.99□□□□□ -1.29
SCFD1-222ENST00000556768 GALNT7Q86SF2 657 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 CNTN4Q8IWV2 1026 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 OR4N4Q8N0Y3 316 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 ZADH2Q8N4Q0 377 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 CPT1CQ8TCG5 803 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 PRAP1Q96NZ9 151 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 AGAP4Q96P64 663 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 NDNQ99608 321 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 SMAD5Q99717 465 aaKnown RBP6.99□□□□□ -1.29
SCFD1-222ENST00000556768 HAUS8Q9BT25 410 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 CRB3Q9BUF7 120 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 TRIM31Q9BZY9 425 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 BHLHE41Q9C0J9 482 aaPredicted RBP6.99□□□□□ -1.29
SCFD1-222ENST00000556768 DRC3Q9H069 523 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 SOX17Q9H6I2 414 aaPredicted RBP6.99□□□□□ -1.29
SCFD1-222ENST00000556768 GPAMQ9HCL2 828 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 ARL15Q9NXU5 204 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 NSMCE4AQ9NXX6 385 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 TRPC4Q9UBN4 977 aa6.99□□□□□ -1.29
SCFD1-222ENST00000556768 SPENQ96T58 3664 aaKnown RBP6.99□□□□□ -1.29
SCFD1-222ENST00000556768 USP27XA6NNY8 438 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 TTI1O43156 1089 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 SEC31AO94979 1220 aaKnown RBP6.98□□□□□ -1.29
SCFD1-222ENST00000556768 ZGLP1P0C6A0 271 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 ITGA8P53708 1063 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 AP1S2P56377 157 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 RPS15AP62244 130 aaKnown RBP6.98□□□□□ -1.29
SCFD1-222ENST00000556768 AP2B1P63010 937 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 SKP1P63208 163 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 FAM53BQ14153 422 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 MPP2Q14168 576 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 RPS26P11Q5JNZ5 115 aaPredicted RBP6.98□□□□□ -1.29
SCFD1-222ENST00000556768 HP1BP3Q5SSJ5 553 aaPredicted RBP6.98□□□□□ -1.29
SCFD1-222ENST00000556768 TEDDM1Q5T9Z0 273 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 CAPN13Q6MZZ7 669 aaPredicted RBP6.98□□□□□ -1.29
SCFD1-222ENST00000556768 FAM45BPQ6NSW5 357 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 JMJD6Q6NYC1 403 aaPredicted RBP6.98□□□□□ -1.29
SCFD1-222ENST00000556768 PAQR3Q6TCH7 311 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 CYHR1Q6ZMK1 362 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 C17orf64Q86WR6 236 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 METTL27Q8N6F8 245 aaPredicted RBP6.98□□□□□ -1.29
SCFD1-222ENST00000556768 CAMKVQ8NCB2 501 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 PPFIBP2Q8ND30 876 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 GIMAP7Q8NHV1 300 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 FAM45AQ8TCE6 357 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 STT3BQ8TCJ2 826 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 CDKL2Q92772 493 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 PNPLA2Q96AD5 504 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 MMABQ96EY8 250 aaPredicted RBP6.98□□□□□ -1.29
SCFD1-222ENST00000556768 LINGO1Q96FE5 620 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 PDLIM2Q96JY6 352 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 KRT12Q99456 494 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 SLC30A3Q99726 388 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 NUDT9Q9BW91 350 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 SLC29A3Q9BZD2 475 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 ILKAPQ9H0C8 392 aaPredicted RBP6.98□□□□□ -1.29
SCFD1-222ENST00000556768 TMEM184CQ9NVA4 438 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 C3orf18Q9UK00 162 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 CHMP2BQ9UQN3 213 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 B3GNT3Q9Y2A9 372 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 UTP11Q9Y3A2 253 aaKnown RBP6.98□□□□□ -1.29
SCFD1-222ENST00000556768 NBASA2RRP1 2371 aa6.98□□□□□ -1.29
SCFD1-222ENST00000556768 SEC16AO15027 2179 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 HECTD1Q9ULT8 2610 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 MAP2K7O14733 419 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 HEXBP07686 556 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 UMODP07911 640 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 ENO2P09104 434 aaPredicted RBP6.97□□□□□ -1.29
SCFD1-222ENST00000556768 SLC35G6P0C7Q6 338 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 MYBL2P10244 700 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 BMP2P12643 396 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 ICAM2P13598 275 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 SAT1P21673 171 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 IVDP26440 423 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 IMPA1P29218 277 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 CASQ1P31415 396 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 EMP2P54851 167 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 SOX8P57073 446 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 KLC1Q07866 573 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 MGAT5Q09328 741 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 HYAL2Q12891 473 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 PDIA2Q13087 525 aaKnown RBP6.97□□□□□ -1.29
SCFD1-222ENST00000556768 NAE1Q13564 534 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 TUBB8Q3ZCM7 444 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 NADK2Q4G0N4 442 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 HECTD2Q5U5R9 776 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 PRAMEF13Q5VWM6 474 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 HIBCHQ6NVY1 386 aaPredicted RBP6.97□□□□□ -1.29
SCFD1-222ENST00000556768 AGTRAPQ6RW13 159 aa6.97□□□□□ -1.29
SCFD1-222ENST00000556768 SHISA6Q6ZSJ9 500 aa6.97□□□□□ -1.29
Retrieved 100 of 20,778 RNA–protein pairs in 43.1 ms