RNA–Protein interactions for RNA: ENST00000550008.6

CUX1-214, Transcript of cut like homeobox 1, humanhuman

APPRIS ALT2 TSL 5 BASIC

Gene CUX1, Length 4,350 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Cytosol, Exosome, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CUX1-214ENST00000550008 C5AR2Q9P296 337 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 LHX3Q9UBR4 397 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 CLEC4EQ9ULY5 219 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 COLEC10Q9Y6Z7 277 aa14.52□□□□□ -0.08
CUX1-214ENST00000550008 A0A1W2PPW3 197 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 GRXCR1A8MXD5 290 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 NME6O75414 186 aaPredicted RBP14.52□□□□□ -0.09
CUX1-214ENST00000550008 SOX14O95416 240 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 DDX6P26196 483 aaKnown RBP eCLIP14.52□□□□□ -0.09
CUX1-214ENST00000550008 CCR7P32248 378 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 AVPR1BP47901 424 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 LBX1P52954 281 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 ID2Q02363 134 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 ZNHIT3Q15649 155 aaPredicted RBP14.52□□□□□ -0.09
CUX1-214ENST00000550008 RGS21Q2M5E4 152 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 PLEKHS1Q5SXH7 462 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 PDZK1Q5T2W1 519 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 XKR5Q6UX68 686 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 ERN2Q76MJ5 926 aaKnown RBP14.52□□□□□ -0.09
CUX1-214ENST00000550008 VTCN1Q7Z7D3 282 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 HS3ST5Q8IZT8 346 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 GALNT15Q8N3T1 639 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 MAL2Q969L2 176 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 C1GALT1C1Q96EU7 318 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 PYURFQ96I23 114 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 SLC35G5Q96KT7 338 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 VAPAQ9P0L0 249 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 E7EQ34 232 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 SLC35G6P0C7Q6 338 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 C6P13671 934 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 RFC2P35250 354 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 RPS6KA3P51812 740 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 CTSCP53634 463 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 SMIM11AP58511 58 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 TARDBPQ13148 414 aaKnown RBP eCLIP14.52□□□□□ -0.099e-7■■■■□ 26.1
CUX1-214ENST00000550008 GK3PQ14409 553 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 MINDY4Q4G0A6 757 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 MINDY1Q8N5J2 469 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 GPR150Q8NGU9 434 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 RNF31Q96EP0 1072 aa14.52□□□□□ -0.09
CUX1-214ENST00000550008 MAGED1Q9Y5V3 778 aaPredicted RBP14.52□□□□□ -0.09
CUX1-214ENST00000550008 ZNF860A6NHJ4 632 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 RPS17P08708 135 aaKnown RBP14.51□□□□□ -0.09
CUX1-214ENST00000550008 EIF2B2P49770 351 aaKnown RBP14.51□□□□□ -0.09
CUX1-214ENST00000550008 SMARCD3Q6STE5 483 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 SMPDL3AQ92484 453 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 TEFMQ96QE5 360 aaKnown RBP14.51□□□□□ -0.09
CUX1-214ENST00000550008 SMOXQ9NWM0 555 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 TRBC2A0A5B9 178 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 KPNA4O00629 521 aaPredicted RBP14.51□□□□□ -0.09
CUX1-214ENST00000550008 SAGP10523 405 aaPredicted RBP14.51□□□□□ -0.09
CUX1-214ENST00000550008 HOXB2P14652 356 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 ERVFC1P60507 584 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 STX4Q12846 297 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 SLC9A5Q14940 896 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 SPIN4Q56A73 249 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 NUDT13Q86X67 352 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 DEFB119Q8N690 84 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 HUS1BQ8NHY5 278 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 ZUFSPQ96AP4 578 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 SLC38A2Q96QD8 506 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 INPP5KQ9BT40 448 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 CCNB1IP1Q9NPC3 277 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 TRPS1Q9UHF7 1281 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 FEZF1A0PJY2 475 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 CCNB2O95067 398 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 CCNDBP1O95273 360 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 TIMP1P01033 207 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 TIMM50Q3ZCQ8 353 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 CLEC12AQ5QGZ9 265 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 OR52L1Q8NGH7 329 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 F2RL3Q96RI0 385 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 HDHD2Q9H0R4 259 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 C8orf4Q9NR00 106 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 THUMPD1Q9NXG2 353 aaKnown RBP14.51□□□□□ -0.09
CUX1-214ENST00000550008 PTTG2Q9NZH5 202 aa14.51□□□□□ -0.09
CUX1-214ENST00000550008 LAMP1P11279 417 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 LAMP2P13473 410 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 TNFRSF1BP20333 461 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 CPN2P22792 545 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 AZGP1P25311 298 aaKnown RBP14.5□□□□□ -0.09
CUX1-214ENST00000550008 RPL34P49207 117 aaKnown RBP14.5□□□□□ -0.09
CUX1-214ENST00000550008 DSTNP60981 165 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 CSNK2BP67870 215 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 LASP1Q14847 261 aaKnown RBP14.5□□□□□ -0.09
CUX1-214ENST00000550008 FAM26DQ5JW98 314 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 P2RY8Q86VZ1 359 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 DTWD1Q8N5C7 304 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 CD320Q9NPF0 282 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 NUMBLQ9Y6R0 609 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 EP400Q96L91 3159 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 J3QRK9 145 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 FBP2O00757 339 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 TPD52L2O43399 206 aaKnown RBP14.5□□□□□ -0.09
CUX1-214ENST00000550008 FGF4P08620 206 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 CAPZA2P47755 286 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 ELAVL3Q14576 367 aaKnown RBP14.5□□□□□ -0.09
CUX1-214ENST00000550008 NPTX1Q15818 432 aa14.5□□□□□ -0.09
CUX1-214ENST00000550008 OGFRL1Q5TC84 451 aaPredicted RBP14.5□□□□□ -0.09
CUX1-214ENST00000550008 MANEALQ5VSG8 457 aa14.5□□□□□ -0.09
Retrieved 100 of 20,778 RNA–protein pairs in 22.3 ms