RNA–Protein interactions for RNA: ENST00000547825.5

LIMA1-203, Transcript of LIM domain and actin binding 1, humanhuman

APPRIS ALT2 TSL 1 (best) BASIC

Gene LIMA1, Length 3,920 nt, Biotype protein coding, Subcellular localisation Cytosol, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMA1-203ENST00000547825 NANOGP8Q6NSW7 305 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 UGT3A1Q6NUS8 523 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ERAP2Q6P179 960 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 TIFABQ6ZNK6 161 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 PHC2Q8IXK0 858 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF614Q8N883 585 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 CHST14Q8NCH0 376 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 LRRC20Q8TCA0 184 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 STYXQ8WUJ0 223 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 TRUB1Q8WWH5 349 aaKnown RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 LGALS12Q96DT0 336 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 BIRC8Q96P09 236 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ASB2Q96Q27 587 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ORAI3Q9BRQ5 295 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 OSBPL10Q9BXB5 764 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 NPLQ9BXD5 320 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 TEX12Q9BXU0 123 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 XYLT2Q9H1B5 865 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 NANOGQ9H9S0 305 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 BEX1Q9HBH7 125 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 C1GALT1Q9NS00 363 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 CCM2LQ9NUG4 571 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF490Q9ULM2 529 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 USP22Q9UPT9 525 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ARL5AQ9Y689 179 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 NUP214P35658 2090 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 IGKV6-21A0A0C4DH24 114 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 G3V2L1 256 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 CASKO14936 926 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 SSNA1O43805 119 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 OR10H3O60404 316 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 NPHS1O60500 1241 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 MITFO75030 526 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 CNTN5O94779 1100 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 LGALS2P05162 132 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 SLC35E2BP0CK96 405 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 BRCC3P46736 316 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 RHOAP61586 193 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 IRF8Q02556 426 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 CDK18Q07002 472 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 IL18Q14116 193 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 PON2Q15165 354 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ZMYND11Q15326 602 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 TARBP2Q15633 366 aaKnown RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 PSMD5Q16401 504 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 TTLL9Q3SXZ7 439 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF404Q494X3 552 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF484Q5JVG2 852 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF648Q5T619 568 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ANKRD26P1Q6NSI1 321 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 DOK6Q6PKX4 331 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 DCP1BQ8IZD4 617 aaKnown RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 CARNMT1Q8N4J0 409 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ATP6V0D2Q8N8Y2 350 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 KDM1BQ8NB78 822 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 SCAMP5Q8TAC9 235 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 PIH1D2Q8WWB5 315 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 STARD8Q92502 1023 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 CCDC140Q96MF4 163 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 GPR22Q99680 433 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 DUSP23Q9BVJ7 150 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 JAM3Q9BX67 310 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 EBPLQ9BY08 206 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF717Q9BY31 904 aaPredicted RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 HDAC8Q9BY41 377 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 DUSP16Q9BY84 665 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 POLR1EQ9GZS1 481 aaKnown RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ATG10Q9H0Y0 220 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 ASB8Q9H765 288 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 INTS10Q9NVR2 710 aaKnown RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 PTBP2Q9UKA9 531 aaKnown RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 CLCA3PQ9Y6N3 262 aa5.32□□□□□ -1.56
LIMA1-203ENST00000547825 HELZP42694 1942 aaKnown RBP5.32□□□□□ -1.56
LIMA1-203ENST00000547825 SAGE2PA6NJ88 616 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 FAM220BPB1ANY3 271 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 SLC22A1O15245 554 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 GOT2P00505 430 aaKnown RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 TIMP1P01033 207 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 G6PDP11413 515 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF26P17031 533 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 KCNA5P22460 613 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 CDH12P55289 794 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 CDC42P60953 191 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 FCHO2Q0JRZ9 810 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 PTGR1Q14914 329 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 UGT8Q16880 541 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 PLA2G4EQ3MJ16 856 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 KLHL12Q53G59 568 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF789Q5FWF6 425 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF544Q6NX49 715 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 FAM151BQ6UXP7 276 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 ASB18Q6ZVZ8 466 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 UNC93AQ86WB7 457 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 SIDT2Q8NBJ9 832 aaKnown RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 ZNF420Q8TAQ5 688 aaPredicted RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 NDNFQ8TB73 568 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 TFAP2CQ92754 450 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 RPL3LQ92901 407 aaKnown RBP5.31□□□□□ -1.56
LIMA1-203ENST00000547825 PYCR2Q96C36 320 aa5.31□□□□□ -1.56
LIMA1-203ENST00000547825 CGREF1Q99674 301 aa5.31□□□□□ -1.56
Retrieved 100 of 20,778 RNA–protein pairs in 35.4 ms