RNA–Protein interactions for RNA: ENST00000545689.2

COL4A6-209, Transcript of collagen type IV alpha 6 chain, humanhuman

TSL 1 (best) BASIC

Gene COL4A6, Length 6,380 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
COL4A6-209ENST00000545689 Q6ZVU0 165 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 C14orf80Q86SX3 495 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 ELOA3Q8NG57 546 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 BBS10Q8TAM1 723 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 L3HYPDHQ96EM0 354 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 ALPK1Q96QP1 1244 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 REEP4Q9H6H4 257 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 AASSQ9UDR5 926 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 MTRF1O75570 445 aaKnown RBP12.15□□□□□ -0.46
COL4A6-209ENST00000545689 FSHRP23945 695 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 CBX5P45973 191 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 SEC13P55735 322 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 KCNC4Q03721 635 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 NANOGP8Q6NSW7 305 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 C12orf43Q96C57 262 aaKnown RBP12.15□□□□□ -0.46
COL4A6-209ENST00000545689 OR51V1Q9H2C8 321 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 NANOGQ9H9S0 305 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 TAC3Q9UHF0 121 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 CLEC4AQ9UMR7 237 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 FKBP7Q9Y680 259 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 KLHL33A6NCF5 533 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 ERI3O43414 337 aaKnown RBP12.15□□□□□ -0.46
COL4A6-209ENST00000545689 DENRO43583 198 aaKnown RBP12.15□□□□□ -0.46
COL4A6-209ENST00000545689 TPST2O60704 377 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 SLC2A2P11168 524 aaPredicted RBP12.15□□□□□ -0.46
COL4A6-209ENST00000545689 UNC50Q53HI1 259 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 KANK2Q63ZY3 851 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 CEACAM20Q6UY09 585 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 SLC36A4Q6YBV0 504 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 TRAM1L1Q8N609 369 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 KCNA7Q96RP8 456 aa12.15□□□□□ -0.46
COL4A6-209ENST00000545689 ACP5P13686 325 aa12.15□□□□□ -0.47
COL4A6-209ENST00000545689 ACRV1P26436 265 aa12.15□□□□□ -0.47
COL4A6-209ENST00000545689 FPGSQ05932 587 aa12.15□□□□□ -0.47
COL4A6-209ENST00000545689 LRRC73Q5JTD7 316 aa12.15□□□□□ -0.47
COL4A6-209ENST00000545689 COLEC12Q5KU26 742 aa12.15□□□□□ -0.47
COL4A6-209ENST00000545689 ZNF776Q68DI1 518 aaPredicted RBP12.15□□□□□ -0.47
COL4A6-209ENST00000545689 REEP3Q6NUK4 255 aa12.15□□□□□ -0.47
COL4A6-209ENST00000545689 SMARCD3Q6STE5 483 aa12.15□□□□□ -0.47
COL4A6-209ENST00000545689 ZNF367Q7RTV3 350 aa12.15□□□□□ -0.47
COL4A6-209ENST00000545689 SERINC5Q86VE9 423 aa12.15□□□□□ -0.47
COL4A6-209ENST00000545689 TNFAIP8L1Q8WVP5 186 aa12.15□□□□□ -0.47
COL4A6-209ENST00000545689 TMEM74Q96NL1 305 aa12.15□□□□□ -0.47
COL4A6-209ENST00000545689 EPYCQ99645 322 aa12.15□□□□□ -0.47
COL4A6-209ENST00000545689 SLC2A11Q9BYW1 496 aa12.15□□□□□ -0.47
COL4A6-209ENST00000545689 DPEP2Q9H4A9 486 aa12.15□□□□□ -0.47
COL4A6-209ENST00000545689 C11orf49Q9H6J7 331 aa12.15□□□□□ -0.47
COL4A6-209ENST00000545689 ZNF696Q9H7X3 374 aa12.15□□□□□ -0.47
COL4A6-209ENST00000545689 RC3H2Q9HBD1 1191 aaKnown RBP12.15□□□□□ -0.47
COL4A6-209ENST00000545689 DOT1LQ8TEK3 1739 aa12.15□□□□□ -0.47
COL4A6-209ENST00000545689 ADH1BP00325 375 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 ALAS2P22557 587 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 GLDCP23378 1020 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 HRH2P25021 359 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 GABARAPL2P60520 117 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 SLC10A2Q12908 348 aaPredicted RBP12.14□□□□□ -0.47
COL4A6-209ENST00000545689 FADDQ13158 208 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 TOR1AIP1Q5JTV8 583 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 CLIP4Q8N3C7 705 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 AQP11Q8NBQ7 271 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 SCLYQ96I15 445 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 PLEKHA1Q9HB21 404 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 HSPE1-MOB4S4R3N1 261 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 CRYBG1Q9Y4K1 1723 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 TRBV23OR9-2A0A075B6M9 112 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 FAM170BA6NMN3 283 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 FAM72CH0Y354 149 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 ARL6IP5O75915 188 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 FAM189A2Q15884 450 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 RNASE12Q5GAN4 147 aaKnown RBP12.14□□□□□ -0.47
COL4A6-209ENST00000545689 FAM72AQ5TYM5 149 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 PRPF38BQ5VTL8 546 aaKnown RBP12.14□□□□□ -0.47
COL4A6-209ENST00000545689 FAM72DQ6L9T8 149 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 FAM72BQ86X60 149 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 GNPDA2Q8TDQ7 276 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 BTBD1Q9H0C5 482 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 RNF6Q9Y252 685 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 PCDHGA2Q9Y5H1 932 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 M0QX08 132 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 LEFTY2O00292 366 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 NDUFS4O43181 175 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 CHRNA1P02708 482 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 ALPPL2P10696 532 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 RPS13P62277 151 aaKnown RBP12.14□□□□□ -0.47
COL4A6-209ENST00000545689 CCDC107Q8WV48 283 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 TFGQ92734 400 aaPredicted RBP12.14□□□□□ -0.47
COL4A6-209ENST00000545689 ZSWIM3Q96MP5 696 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 CARS2Q9HA77 564 aaKnown RBP12.14□□□□□ -0.47
COL4A6-209ENST00000545689 IFT46Q9NQC8 304 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 TOR1BO14657 336 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 F7P08709 466 aaPredicted RBP12.14□□□□□ -0.47
COL4A6-209ENST00000545689 CDH15P55291 814 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 BNIP3Q12983 259 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 SNAP47Q5SQN1 464 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 MARK1Q9P0L2 795 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 MED31Q9Y3C7 131 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 GRIP1Q9Y3R0 1128 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 RGPD2P0DJD1 1756 aa12.14□□□□□ -0.47
COL4A6-209ENST00000545689 EIF3FO00303 357 aaPredicted RBP12.14□□□□□ -0.47
COL4A6-209ENST00000545689 SLC31A1O15431 190 aa12.14□□□□□ -0.47
Retrieved 100 of 20,778 RNA–protein pairs in 51.2 ms