RNA–Protein interactions for RNA: ENST00000540960.1

CHD4-208, Transcript of chromodomain helicase DNA binding protein 4, humanhuman

TSL 5

Gene CHD4, Length 892 nt, Biotype processed transcript, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CHD4-208ENST00000540960 RHBDF1Q96CC6 855 aa8.08□□□□□ -1.12
CHD4-208ENST00000540960 FBXL8Q96CD0 374 aa8.08□□□□□ -1.12
CHD4-208ENST00000540960 TUBGCP3Q96CW5 907 aa8.08□□□□□ -1.12
CHD4-208ENST00000540960 REPS1Q96D71 796 aa8.08□□□□□ -1.12
CHD4-208ENST00000540960 KLHDC7BQ96G42 594 aa8.08□□□□□ -1.12
CHD4-208ENST00000540960 CATSPER2Q96P56 530 aa8.08□□□□□ -1.12
CHD4-208ENST00000540960 SMIM14Q96QK8 99 aa8.08□□□□□ -1.12
CHD4-208ENST00000540960 ZBTB18Q99592 522 aa8.08□□□□□ -1.12
CHD4-208ENST00000540960 MYOCQ99972 504 aa8.08□□□□□ -1.12
CHD4-208ENST00000540960 NTMT1Q9BV86 223 aa8.08□□□□□ -1.12
CHD4-208ENST00000540960 PCBD2Q9H0N5 130 aa8.08□□□□□ -1.12
CHD4-208ENST00000540960 DCLRE1BQ9H816 532 aa8.08□□□□□ -1.12
CHD4-208ENST00000540960 IPPKQ9H8X2 491 aa8.08□□□□□ -1.12
CHD4-208ENST00000540960 PHPT1Q9NRX4 125 aaPredicted RBP8.08□□□□□ -1.12
CHD4-208ENST00000540960 GID8Q9NWU2 228 aa8.08□□□□□ -1.12
CHD4-208ENST00000540960 TAS2R1Q9NYW7 299 aa8.08□□□□□ -1.12
CHD4-208ENST00000540960 GPRC5BQ9NZH0 403 aa8.08□□□□□ -1.12
CHD4-208ENST00000540960 ARMCX1Q9P291 453 aa8.08□□□□□ -1.12
CHD4-208ENST00000540960 FZD4Q9ULV1 537 aa8.08□□□□□ -1.12
CHD4-208ENST00000540960 EIF3LQ9Y262 564 aaKnown RBP8.08□□□□□ -1.12
CHD4-208ENST00000540960 NDUFAF1Q9Y375 327 aa8.08□□□□□ -1.12
CHD4-208ENST00000540960 FADS3Q9Y5Q0 445 aa8.08□□□□□ -1.12
CHD4-208ENST00000540960 JMJD1CQ15652 2540 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 TBC1D3DA0A087WVF3 549 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 TBC1D3IA0A087WXS9 549 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 TBC1D3EA0A087X179 549 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 TBC1D3KA0A087X1G2 549 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 C15orf38-AP3S2A0A0A6YYH1 394 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 TBC1D3FA6NER0 549 aaPredicted RBP8.07□□□□□ -1.12
CHD4-208ENST00000540960 MGAT4DA6NG13 374 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 TBC1D3LB9A6J9 549 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 H3BM21 787 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 FKBP6O75344 327 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 ULK1O75385 1050 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 PSIP1O75475 530 aaKnown RBP8.07□□□□□ -1.12
CHD4-208ENST00000540960 SNRPB2P08579 225 aaKnown RBP8.07□□□□□ -1.12
CHD4-208ENST00000540960 F7P08709 466 aaPredicted RBP8.07□□□□□ -1.12
CHD4-208ENST00000540960 HOXC4P09017 264 aaPredicted RBP8.07□□□□□ -1.12
CHD4-208ENST00000540960 TBC1D3HP0C7X1 549 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 ACPPP15309 386 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 DDX5P17844 614 aaKnown RBP8.07□□□□□ -1.12
CHD4-208ENST00000540960 ARRB2P32121 409 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 CCR7P32248 378 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 PSMD8P48556 350 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 ADPRHP54922 357 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 ERVK-8P63133 956 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 FOXM1Q08050 763 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 PCDH1Q08174 1060 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 BOP1Q14137 746 aaKnown RBP8.07□□□□□ -1.12
CHD4-208ENST00000540960 FASTKQ14296 549 aaKnown RBP8.07□□□□□ -1.12
CHD4-208ENST00000540960 DEFB133Q30KQ1 61 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 UGT3A2Q3SY77 523 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 PAGE2BQ5JRK9 111 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 CACHD1Q5VU97 1274 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 TBC1D3GQ6DHY5 549 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 RAET1GQ6H3X3 334 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 TBC1D3CQ6IPX1 549 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 TCTN3Q6NUS6 607 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 ZCCHC8Q6NZY4 707 aaKnown RBP8.07□□□□□ -1.12
CHD4-208ENST00000540960 AAGABQ6PD74 315 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 UNC5DQ6UXZ4 953 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 CYHR1Q6ZMK1 362 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 LARP4Q71RC2 724 aaKnown RBP eCLIP8.07□□□□□ -1.12
CHD4-208ENST00000540960 ARPINQ7Z6K5 226 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 KLHDC8AQ8IYD2 350 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 SLC22A15Q8IZD6 547 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 TBC1D3Q8IZP1 549 aaPredicted RBP8.07□□□□□ -1.12
CHD4-208ENST00000540960 PGAM4Q8N0Y7 254 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 SLC22A18ASQ8N1D0 253 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 PELI3Q8N2H9 469 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 GLB1L3Q8NCI6 653 aaPredicted RBP8.07□□□□□ -1.12
CHD4-208ENST00000540960 SPATA3Q8NHX4 192 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 VOPP1Q96AW1 172 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 FAM136AQ96C01 138 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 OR52B2Q96RD2 323 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 HOPXQ9BPY8 73 aaPredicted RBP8.07□□□□□ -1.12
CHD4-208ENST00000540960 DUSP23Q9BVJ7 150 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 BOCQ9BWV1 1114 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 VCX3BQ9H321 246 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 WDR55Q9H6Y2 383 aaPredicted RBP8.07□□□□□ -1.12
CHD4-208ENST00000540960 SEMA4BQ9NPR2 832 aaPredicted RBP8.07□□□□□ -1.12
CHD4-208ENST00000540960 DNAJC11Q9NVH1 559 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 ZIM2Q9NZV7 527 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 BAIAP2L1Q9UHR4 511 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 ACSL5Q9ULC5 683 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 TMED5Q9Y3A6 229 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 DNAJC15Q9Y5T4 150 aa8.07□□□□□ -1.12
CHD4-208ENST00000540960 MAP1AP78559 2803 aaPredicted RBP8.06□□□□□ -1.12
CHD4-208ENST00000540960 A0A1W2PQM1 296 aa8.06□□□□□ -1.12
CHD4-208ENST00000540960 SERTM1A2A2V5 107 aa8.06□□□□□ -1.12
CHD4-208ENST00000540960 ZNF891A8MT65 544 aaPredicted RBP8.06□□□□□ -1.12
CHD4-208ENST00000540960 IQCF5A8MTL0 148 aa8.06□□□□□ -1.12
CHD4-208ENST00000540960 IQCJ-SCHIP1C9J366 451 aaPredicted RBP8.06□□□□□ -1.12
CHD4-208ENST00000540960 CLGNO14967 610 aa8.06□□□□□ -1.12
CHD4-208ENST00000540960 ANGPT2O15123 496 aa8.06□□□□□ -1.12
CHD4-208ENST00000540960 KMOO15229 486 aa8.06□□□□□ -1.12
CHD4-208ENST00000540960 CCNT2O60583 730 aaKnown RBP8.06□□□□□ -1.12
CHD4-208ENST00000540960 DNAJA2O60884 412 aa8.06□□□□□ -1.12
CHD4-208ENST00000540960 PCDH8O95206 1070 aa8.06□□□□□ -1.12
CHD4-208ENST00000540960 SIX3O95343 332 aaPredicted RBP8.06□□□□□ -1.12
Retrieved 100 of 20,778 RNA–protein pairs in 18.4 ms