RNA–Protein interactions for RNA: ENST00000538933.1

CLSTN3-208, Transcript of calsyntenin 3, humanhuman

TSL 3

Gene CLSTN3, Length 583 nt, Biotype retained intron, Subcellular localisation Cytoplasm, Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CLSTN3-208ENST00000538933 CFAP61Q8NHU2 1237 aa11.98□□□□□ -0.49
CLSTN3-208ENST00000538933 GIMAP7Q8NHV1 300 aa11.98□□□□□ -0.49
CLSTN3-208ENST00000538933 EEF1AKMT1Q8WVE0 214 aa11.98□□□□□ -0.49
CLSTN3-208ENST00000538933 SLC30A3Q99726 388 aa11.98□□□□□ -0.49
CLSTN3-208ENST00000538933 SLX1AQ9BQ83 275 aa11.98□□□□□ -0.49
CLSTN3-208ENST00000538933 NKIRAS1Q9NYS0 192 aa11.98□□□□□ -0.49
CLSTN3-208ENST00000538933 ACSL5Q9ULC5 683 aa11.98□□□□□ -0.49
CLSTN3-208ENST00000538933 PSMD13Q9UNM6 376 aa11.98□□□□□ -0.49
CLSTN3-208ENST00000538933 MED16Q9Y2X0 877 aa11.98□□□□□ -0.49
CLSTN3-208ENST00000538933 NCOA6Q14686 2063 aaPredicted RBP11.98□□□□□ -0.49
CLSTN3-208ENST00000538933 VPS13CQ709C8 3753 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 SLC5A10A0PJK1 596 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 MASP2O00187 686 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 BTN3A1O00481 513 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 S100BP04271 92 aaPredicted RBP11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 ALPPP05187 535 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 RPL10P27635 214 aaKnown RBP11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 HTR1EP28566 365 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 TIAL1Q01085 375 aaKnown RBP eCLIP11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 SLC18A2Q05940 514 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 DMPKQ09013 629 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 ABRQ12979 859 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 TTC23LQ6PF05 361 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 TMEM207Q6UWW9 146 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 BNC2Q6ZN30 1099 aaPredicted RBP11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 PIWIL4Q7Z3Z4 852 aaKnown RBP11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 C11orf96Q7Z7L8 435 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 MMP21Q8N119 569 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 ANKRD42Q8N9B4 389 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 ANKRD49Q8WVL7 239 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 EXT2Q93063 718 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 NXNL1Q96CM4 212 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 TLCD1Q96CP7 247 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 TRIM54Q9BYV2 358 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 DERL2Q9GZP9 239 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 WWP1Q9H0M0 922 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 SSU72Q9NP77 194 aaKnown RBP11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 CHST11Q9NPF2 352 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 MID2Q9UJV3 735 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 WDR37Q9Y2I8 494 aa11.97□□□□□ -0.49
CLSTN3-208ENST00000538933 NPEPPSL1A6NEC2 478 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 TLCD2A6NGC4 264 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 GPC4O75487 556 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 IPO13O94829 963 aaKnown RBP11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 SLCO2B1O94956 709 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 CATP04040 527 aaKnown RBP11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 RPN2P04844 631 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 RBP1P09455 135 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 HIST1H2AGP0C0S8 130 aaPredicted RBP11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 COX6B1P14854 86 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 CD1DP15813 335 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 TFEBP19484 476 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 HIST1H2ADP20671 130 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 CYP2A7P20853 494 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 GMPRP36959 345 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 TSFMP43897 325 aaKnown RBP11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 ACAP2Q15057 778 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 NCF4Q15080 339 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 CCDC153Q494R4 210 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 TNFAIP8L3Q5GJ75 292 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 METRNLQ641Q3 311 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 ZNF385CQ66K41 422 aaPredicted RBP11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 DUS1LQ6P1R4 473 aaKnown RBP11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 IGFL2Q6UWQ7 119 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 FAM83HQ6ZRV2 1179 aaPredicted RBP11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 NEK10Q6ZWH5 1172 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 ADAMTSL2Q86TH1 951 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 RAB43Q86YS6 212 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 SYTL1Q8IYJ3 562 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 SLC22A15Q8IZD6 547 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 LILRA3Q8N6C8 439 aaPredicted RBP11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 ARFGAP2Q8N6H7 521 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 BANPQ8N9N5 519 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 STAG3L4Q8TBR4 150 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 HIST1H2AHQ96KK5 128 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 C12orf66Q96MD2 445 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 HIST1H2AJQ99878 128 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 PAIP2Q9BPZ3 127 aaKnown RBP11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 WDR77Q9BQA1 342 aaPredicted RBP11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 H2AFJQ9BTM1 129 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 ALG9Q9H6U8 611 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 MKS1Q9NXB0 559 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 CAMSAP3Q9P1Y5 1249 aaPredicted RBP11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 RNF112Q9ULX5 631 aa11.96□□□□□ -0.49
CLSTN3-208ENST00000538933 TMEM120BA0PK00 339 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 SYCE1LA8MT33 242 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 SUPT3HB4E1H0 165 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 ZBTB14O43829 449 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 KDM1AO60341 852 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 SUPT3HO75486 399 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 ZWINTO95229 277 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 C8GP07360 202 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 NEFHP12036 1026 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 CREB1P16220 341 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 TAC1P20366 129 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 CAPN3P20807 821 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 PDHA2P29803 388 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 OTX2P32243 289 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 CRHR1P34998 444 aa11.95□□□□□ -0.5
CLSTN3-208ENST00000538933 PPP2R2AP63151 447 aa11.95□□□□□ -0.5
Retrieved 100 of 20,778 RNA–protein pairs in 36.1 ms