RNA–Protein interactions for RNA: ENST00000528455.5

CD44-228, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 3

Gene CD44, Length 687 nt, Biotype protein coding, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-228ENST00000528455 ABCE1P61221 599 aaKnown RBP7.13□□□□□ -1.27
CD44-228ENST00000528455 ABATP80404 500 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 SHC2P98077 582 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 RELAQ04206 551 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 PRDX1Q06830 199 aaKnown RBP7.13□□□□□ -1.27
CD44-228ENST00000528455 BIRC2Q13490 618 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 GTF2H2Q13888 395 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 E2F2Q14209 437 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 RCN2Q14257 317 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 GPR18Q14330 331 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 KIR2DS3Q14952 304 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 NR1D2Q14995 579 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 LIPJQ5W064 366 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 SLC6A19Q695T7 634 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 GTF2H2CQ6P1K8 395 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 LCTLQ6UWM7 567 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 GK5Q6ZS86 529 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 LRRC70Q7Z2Q7 622 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 THOC6Q86W42 341 aaKnown RBP7.13□□□□□ -1.27
CD44-228ENST00000528455 GATAD2AQ86YP4 633 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 CCNYL1Q8N7R7 359 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 ARL10Q8N8L6 244 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 LMNTD1Q8N9Z9 388 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 OR2A1Q8NGT9 310 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 OR2I1PQ8NGU4 316 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 ZNF483Q8TF39 744 aaPredicted RBP7.13□□□□□ -1.27
CD44-228ENST00000528455 PATE1Q8WXA2 126 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 ZUFSPQ96AP4 578 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 ESAMQ96AP7 390 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 TMEM237Q96Q45 408 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 ATG10Q9H0Y0 220 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 SRMSQ9H3Y6 488 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 GSTO2Q9H4Y5 243 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 CAAP1Q9H8G2 361 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 IPPKQ9H8X2 491 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 IL21RQ9HBE5 538 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 DNAJC11Q9NVH1 559 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 WWOXQ9NZC7 414 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 GPRC5BQ9NZH0 403 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 HAO1Q9UJM8 370 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 PCTPQ9UKL6 214 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 PADI4Q9UM07 663 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 STK38LQ9Y2H1 464 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 CEP295Q9C0D2 2601 aa7.13□□□□□ -1.27
CD44-228ENST00000528455 PRAMEF33A0A0G2JMD5 474 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 A0A1W2PPV9 198 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 PIPSLA2A3N6 862 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 LILRA5A6NI73 299 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 RHPN2P1A8MT19 583 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 B4DGG1 531 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 SLCO1B7G3V0H7 640 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 TRIM38O00635 465 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 CLGNO14967 610 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 FLRT2O43155 660 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 TNFSF14O43557 240 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 SIGLEC6O43699 453 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 CCNT2O60583 730 aaKnown RBP7.12□□□□□ -1.27
CD44-228ENST00000528455 UGDHO60701 494 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 DNAJA2O60884 412 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 WDR47O94967 919 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 TGDSO95455 350 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 CLDN9O95484 217 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 OTCP00480 354 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 EBLN1P0CF75 366 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 CKMT1AP12532 417 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 CD59P13987 128 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 AMD1P17707 334 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 BGNP21810 368 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 CXCR2P25025 360 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 PKLRP30613 574 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 LSP1P33241 339 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 GRK6P43250 576 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 BDKRB1P46663 353 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 AGTR2P50052 363 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 GYS2P54840 703 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 CDH13P55290 713 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 SIM1P81133 766 aaPredicted RBP7.12□□□□□ -1.27
CD44-228ENST00000528455 ZNF33BQ06732 778 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 BST1Q10588 318 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 LCP2Q13094 533 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 PRKAA1Q13131 559 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 LAPTM5Q13571 262 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 FASTKQ14296 549 aaKnown RBP7.12□□□□□ -1.27
CD44-228ENST00000528455 NR0B2Q15466 257 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 TCEA2Q15560 299 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 TRIP6Q15654 476 aaKnown RBP7.12□□□□□ -1.27
CD44-228ENST00000528455 TBCCQ15814 346 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 C18orf21Q32NC0 220 aaPredicted RBP7.12□□□□□ -1.27
CD44-228ENST00000528455 INAVAQ3KP66 663 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 ARL13AQ5H913 290 aaPredicted RBP7.12□□□□□ -1.27
CD44-228ENST00000528455 PRAMEF13Q5VWM6 474 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 MBOAT1Q6ZNC8 495 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 FRMD7Q6ZUT3 714 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 MILR1Q7Z6M3 343 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 ZDHHC13Q8IUH4 622 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 SLC35F3Q8IY50 421 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 ADGRF3Q8IZF5 1079 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 CLYBLQ8N0X4 340 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 LSMEM2Q8N112 164 aa7.12□□□□□ -1.27
CD44-228ENST00000528455 EID2Q8N6I1 236 aa7.12□□□□□ -1.27
Retrieved 100 of 20,778 RNA–protein pairs in 44.3 ms