RNA–Protein interactions for RNA: ENST00000528086.5

CD44-227, Transcript of CD44 molecule (Indian blood group), humanhuman

TSL 5

Gene CD44, Length 580 nt, Biotype processed transcript, Subcellular localisation Endoplasmic reticulum, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
CD44-227ENST00000528086 CYSRT1A8MQ03 144 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 CCNDBP1O95273 360 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 CELA2AP08217 269 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 GDF5P43026 501 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 SLC6A12P48065 614 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 PGDP52209 483 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 AP1S2P56377 157 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 KLRB1Q12918 225 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 DSG2Q14126 1118 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 FAM53BQ14153 422 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 FBXO48Q5FWF7 155 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 PRMT9Q6P2P2 845 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 CLEC18BQ6UXF7 455 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 ADCK2Q7Z695 626 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 C17orf64Q86WR6 236 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 KLHDC8AQ8IYD2 350 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 AFAP1L2Q8N4X5 818 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 MFSD9Q8NBP5 474 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 CLEC18CQ8NCF0 446 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 BBOF1Q8ND07 529 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 OR9A4Q8NGU2 314 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 ANKRD7Q92527 254 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 PSMF1Q92530 271 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 ALKBH8Q96BT7 664 aaKnown RBP10.11□□□□□ -0.79
CD44-227ENST00000528086 RHBDF1Q96CC6 855 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 CABS1Q96KC9 395 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 UBXN10Q96LJ8 280 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 C17orf62Q9BQA9 187 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 TMEM79Q9BSE2 394 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 PHACTR1Q9C0D0 580 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 TGIF2Q9GZN2 237 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 LUZP4Q9P127 313 aa10.11□□□□□ -0.79
CD44-227ENST00000528086 GPN3Q9UHW5 284 aaPredicted RBP10.11□□□□□ -0.79
CD44-227ENST00000528086 HEMK1Q9Y5R4 338 aaPredicted RBP10.11□□□□□ -0.79
CD44-227ENST00000528086 HECTD1Q9ULT8 2610 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 RP1L1Q8IWN7 2480 aaPredicted RBP10.1□□□□□ -0.79
CD44-227ENST00000528086 IDSB3KWA1 339 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 URI1O94763 535 aaPredicted RBP10.1□□□□□ -0.79
CD44-227ENST00000528086 BMP10O95393 424 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 ENO2P09104 434 aaPredicted RBP10.1□□□□□ -0.79
CD44-227ENST00000528086 COX6A1P12074 109 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 CD1DP15813 335 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 IL1RNP18510 177 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 FBLP22087 321 aaKnown RBP10.1□□□□□ -0.79
CD44-227ENST00000528086 CALCOCO2Q13137 446 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 MYBPC3Q14896 1274 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 NAA25Q14CX7 972 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 PLEKHN1Q494U1 663 aaPredicted RBP10.1□□□□□ -0.79
CD44-227ENST00000528086 THEMIS2Q5TEJ8 643 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 GARNL3Q5VVW2 1013 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 SLC6A19Q695T7 634 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 ADNP2Q6IQ32 1131 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 CMC1Q7Z7K0 106 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 THOC6Q86W42 341 aaKnown RBP10.1□□□□□ -0.79
CD44-227ENST00000528086 PALM2Q8IXS6 379 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 GALNT16Q8N428 558 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 MMGT1Q8N4V1 131 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 LRRN4CLQ8ND94 238 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 OR5T3Q8NGG3 340 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 FBF1Q8TES7 1133 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 COL26A1Q96A83 441 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 ESAMQ96AP7 390 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 MVB12AQ96EY5 273 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 TSNARE1Q96NA8 513 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 CPNE1Q99829 537 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 MFRPQ9BY79 579 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 DERL2Q9GZP9 239 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 DRC3Q9H069 523 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 PCBD2Q9H0N5 130 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 POPDC3Q9HBV1 291 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 IGSF5Q9NSI5 407 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 TRPC4Q9UBN4 977 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 C3orf18Q9UK00 162 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 SLC22A14Q9Y267 594 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 OARD1Q9Y530 152 aa10.1□□□□□ -0.79
CD44-227ENST00000528086 ESPL1Q14674 2120 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 LOC102723996A0A087X1L8 192 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 SGK494L7N484 410 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 KLHL18O94889 574 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 SLC35E2BP0CK96 405 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 SMIM10L1P0DMW3 83 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 CD22P20273 847 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 HRH2P25021 359 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 VARSP26640 1264 aaKnown RBP10.09□□□□□ -0.79
CD44-227ENST00000528086 GP5P40197 560 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 SCTRP47872 440 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 RPS15AP62244 130 aaKnown RBP10.09□□□□□ -0.79
CD44-227ENST00000528086 CDKL1Q00532 357 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 REEP5Q00765 189 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 POU4F1Q01851 419 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 USP10Q14694 798 aaKnown RBP10.09□□□□□ -0.79
CD44-227ENST00000528086 PCOLCEQ15113 449 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 TGFBIQ15582 683 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 CAPN13Q6MZZ7 669 aaPredicted RBP10.09□□□□□ -0.79
CD44-227ENST00000528086 JMJD6Q6NYC1 403 aaPredicted RBP10.09□□□□□ -0.79
CD44-227ENST00000528086 TMEM205Q6UW68 189 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 IGFL2Q6UWQ7 119 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 IGFL3Q6UXB1 125 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 SLCO4C1Q6ZQN7 724 aa10.09□□□□□ -0.79
CD44-227ENST00000528086 VN1R5Q7Z5H4 357 aa10.09□□□□□ -0.79
Retrieved 100 of 20,778 RNA–protein pairs in 36.5 ms