RNA–Protein interactions for RNA: ENST00000515516.1

TCOF1-215, Transcript of treacle ribosome biogenesis factor 1, humanhuman

TSL 5

Gene TCOF1, Length 661 nt, Biotype protein coding, Subcellular localisation Cytosol, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
TCOF1-215ENST00000515516 CDC16Q13042 620 aa12.96□□□□□ -0.33
TCOF1-215ENST00000515516 PDIA2Q13087 525 aaKnown RBP12.96□□□□□ -0.33
TCOF1-215ENST00000515516 MFAP5Q13361 173 aa12.96□□□□□ -0.33
TCOF1-215ENST00000515516 FRG1Q14331 258 aaKnown RBP12.96□□□□□ -0.33
TCOF1-215ENST00000515516 ZNF169Q14929 603 aaPredicted RBP12.96□□□□□ -0.33
TCOF1-215ENST00000515516 SYT16Q17RD7 645 aa12.96□□□□□ -0.33
TCOF1-215ENST00000515516 STEAP4Q687X5 459 aa12.96□□□□□ -0.33
TCOF1-215ENST00000515516 ASPGQ86U10 573 aa12.96□□□□□ -0.33
TCOF1-215ENST00000515516 OR9A4Q8NGU2 314 aa12.96□□□□□ -0.33
TCOF1-215ENST00000515516 SSC4DQ8WTU2 575 aa12.96□□□□□ -0.33
TCOF1-215ENST00000515516 SLC13A3Q8WWT9 602 aa12.96□□□□□ -0.33
TCOF1-215ENST00000515516 SGPP1Q9BX95 441 aa12.96□□□□□ -0.33
TCOF1-215ENST00000515516 SYNPO2LQ9H987 977 aa12.96□□□□□ -0.33
TCOF1-215ENST00000515516 SLC17A6Q9P2U8 582 aa12.96□□□□□ -0.33
TCOF1-215ENST00000515516 C19orf25Q9UFG5 118 aaPredicted RBP12.96□□□□□ -0.33
TCOF1-215ENST00000515516 NOVA2Q9UNW9 492 aaKnown RBP12.96□□□□□ -0.33
TCOF1-215ENST00000515516 TEX264Q9Y6I9 313 aa12.96□□□□□ -0.33
TCOF1-215ENST00000515516 PCSK5Q92824 1860 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 IGHV1-45A0A0A0MS14 117 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 ANKUB1A6NFN9 424 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 SEC31AO94979 1220 aaKnown RBP12.95□□□□□ -0.34
TCOF1-215ENST00000515516 BMP10O95393 424 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 GUCA1CO95843 209 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 PRR35P0CG20 571 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 C8orf89P0DMQ9 161 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 MYBL2P10244 700 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 NPPBP16860 134 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 TSFMP43897 325 aaKnown RBP12.95□□□□□ -0.34
TCOF1-215ENST00000515516 ILF2Q12905 390 aaKnown RBP12.95□□□□□ -0.34
TCOF1-215ENST00000515516 CSHL1Q14406 222 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 PHKG1Q16816 387 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 MINDY4Q4G0A6 757 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 B3GNTL1Q67FW5 361 aaPredicted RBP12.95□□□□□ -0.34
TCOF1-215ENST00000515516 TMEM214Q6NUQ4 689 aaKnown RBP12.95□□□□□ -0.34
TCOF1-215ENST00000515516 TRMT10BQ6PF06 316 aaKnown RBP12.95□□□□□ -0.34
TCOF1-215ENST00000515516 RIPOR1Q6ZS17 1223 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 VN1R4Q7Z5H5 301 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 STRA8Q7Z7C7 330 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 ZC3H7AQ8IWR0 971 aaKnown RBP12.95□□□□□ -0.34
TCOF1-215ENST00000515516 ARHGEF39Q8N4T4 335 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 NKAPQ8N5F7 415 aaKnown RBP12.95□□□□□ -0.34
TCOF1-215ENST00000515516 MFSD9Q8NBP5 474 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 FBXO36Q8NEA4 188 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 OR51Q1Q8NH59 317 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 FBXL8Q96CD0 374 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 PSMG3-AS1Q96PY0 264 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 KRT12Q99456 494 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 OLFM1Q99784 485 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 MACROD1Q9BQ69 325 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 ZNF700Q9H0M5 742 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 NSMCE4AQ9NXX6 385 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 PTGFRNQ9P2B2 879 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 DYRK1BQ9Y463 629 aa12.95□□□□□ -0.34
TCOF1-215ENST00000515516 HECTD1Q9ULT8 2610 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 TNRC6AQ8NDV7 1962 aaKnown RBP12.94□□□□□ -0.34
TCOF1-215ENST00000515516 LOC102723996A0A087X1L8 192 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 SGK494L7N484 410 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 OR1F1O43749 312 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 SEMA7AO75326 666 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 KLHL18O94889 574 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 CBX6O95503 412 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 TSPAN12O95859 305 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 DDAH2O95865 285 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 SERPIND1P05546 499 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 CYC1P08574 325 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 IL1RNP18510 177 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 BCL6P41182 706 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 SLC12A2P55011 1212 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 SKP1P63208 163 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 CALCOCO2Q13137 446 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 TMEM205Q6UW68 189 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 SLC26A11Q86WA9 606 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 ABHD11Q8NFV4 315 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 OR1N1Q8NGS0 311 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 OR56A3Q8NH54 315 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 ZCCHC10Q8TBK6 192 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 BRIX1Q8TDN6 353 aaKnown RBP12.94□□□□□ -0.34
TCOF1-215ENST00000515516 PYCR2Q96C36 320 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 TM4SF19Q96DZ7 209 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 PDLIM5Q96HC4 596 aaKnown RBP12.94□□□□□ -0.34
TCOF1-215ENST00000515516 VPS39Q96JC1 886 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 MESP1Q9BRJ9 268 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 TUBB6Q9BUF5 446 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 PLAC1Q9HBJ0 212 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 HCN3Q9P1Z3 774 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 TEKT2Q9UIF3 430 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 SH2B3Q9UQQ2 575 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 SNX24Q9Y343 169 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 MRPS2Q9Y399 296 aaKnown RBP12.94□□□□□ -0.34
TCOF1-215ENST00000515516 CSAG2Q9Y5P2 127 aa12.94□□□□□ -0.34
TCOF1-215ENST00000515516 MED13Q9UHV7 2174 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 FAM95CA0A1B0GW59 222 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 A0A1W2PQ72 361 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 NDUFS4O43181 175 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 LCMT2O60294 686 aaKnown RBP12.93□□□□□ -0.34
TCOF1-215ENST00000515516 IL10P22301 178 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 XCR1P46094 333 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 RGS1Q08116 209 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 PWP1Q13610 501 aa12.93□□□□□ -0.34
TCOF1-215ENST00000515516 HERC3Q15034 1050 aa12.93□□□□□ -0.34
Retrieved 100 of 20,778 RNA–protein pairs in 33.7 ms