RNA–Protein interactions for RNA: ENST00000509277.5

LIMCH1-209, Transcript of LIM and calponin homology domains 1, humanhuman

TSL 2 BASIC

Gene LIMCH1, Length 3,474 nt, Biotype protein coding, Subcellular localisation Cytoplasm, Nucleus .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
LIMCH1-209ENST00000509277 PIK3CGP48736 1102 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 CYP4F2P78329 520 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 CYP4F3Q08477 520 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 CAMK2BQ13554 666 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 PRRT3Q5FWE3 981 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 SCIMPQ6UWF3 145 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 KIAA1958Q8N8K9 716 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 PTGR2Q8N8N7 351 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 FAR1Q8WVX9 515 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 COQ10AQ96MF6 247 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 TMEM246Q9BRR3 403 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 FGF22Q9HCT0 170 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 SEMA4BQ9NPR2 832 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 INTS10Q9NVR2 710 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 PAQR5Q9NXK6 330 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 WWOXQ9NZC7 414 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 M0R296 226 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 NUPL2O15504 423 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 PLRG1O43660 514 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 HIST1H2AGP0C0S8 130 aaPredicted RBP8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 HIST1H2ADP20671 130 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 HNRNPA2B1P22626 353 aaKnown RBP8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 ITPKAP23677 461 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 TGFBR1P36897 503 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 SIGLEC14Q08ET2 396 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 RBBP7Q16576 425 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 PXDC1Q5TGL8 231 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 UGT3A1Q6NUS8 523 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 MAVSQ7Z434 540 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 TAF8Q7Z7C8 310 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 GPSM1Q86YR5 675 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 GOLM1Q8NBJ4 401 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 OR10Q1Q8NGQ4 319 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 ULK4Q96C45 1275 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 HIST1H2AHQ96KK5 128 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 TCF12Q99081 682 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 HIST1H2AJQ99878 128 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 H2AFJQ9BTM1 129 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 APOOQ9BUR5 198 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 SYTL2Q9HCH5 934 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 TOR4AQ9NXH8 423 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 MAT2BQ9NZL9 334 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 GULP1Q9UBP9 304 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 DCDC2Q9UHG0 476 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 RIMS3Q9UJD0 308 aa8.4□□□□□ -1.06
LIMCH1-209ENST00000509277 UNC13CQ8NB66 2214 aa8.4□□□□□ -1.07
LIMCH1-209ENST00000509277 PRAMEF33A0A0G2JMD5 474 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 TMEM114B3SHH9 223 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 MRASO14807 208 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 NOBOXO60393 691 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 CRYZL1O95825 349 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 MPOP05164 745 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 ABCB1P08183 1280 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 ZNF37AP17032 561 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 AGTR2P50052 363 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 MLLT10P55197 1068 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 STARD6P59095 220 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 NAB1Q13506 487 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 DDX39BQ13838 428 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 INAVAQ3KP66 663 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 ARL13AQ5H913 290 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 TPRG1LQ5T0D9 272 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 ZFP1Q6P2D0 407 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 UBE2R2Q712K3 238 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 ADCK2Q7Z695 626 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 AMZ2Q86W34 360 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 CENPLQ8N0S6 344 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 ABHD11Q8NFV4 315 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 CD200R1Q8TD46 325 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 PTERQ96BW5 349 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 IL17FQ96PD4 163 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 LYSMD1Q96S90 227 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 GTPBP2Q9BX10 602 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 TCEAL2Q9H3H9 227 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 EPHX3Q9H6B9 360 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 AMBNQ9NP70 447 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 IFT80Q9P2H3 777 aaPredicted RBP8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 SLC23A2Q9UGH3 650 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 GMEB2Q9UKD1 530 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 CNOT6Q9ULM6 557 aaKnown RBP8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 AKAP8LQ9ULX6 646 aaKnown RBP eCLIP8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 B4DGG1 531 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 CLPXO76031 633 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 FTH1P02794 183 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 DPP6P42658 865 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 KCNC1P48547 511 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 HSPA7P48741 367 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 E2F2Q14209 437 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 LAPTM4AQ15012 233 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 SLC14A2Q15849 920 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 MOGQ16653 247 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 ADGRG6Q86SQ4 1221 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 CDH24Q86UP0 819 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 SFTPA2Q8IWL1 248 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 TRIM48Q8IWZ4 208 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 KLHDC8BQ8IXV7 354 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 OR2I1PQ8NGU4 316 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 PATE1Q8WXA2 126 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 KLHDC7BQ96G42 594 aa8.39□□□□□ -1.07
LIMCH1-209ENST00000509277 CEP19Q96LK0 163 aa8.39□□□□□ -1.07
Retrieved 100 of 20,778 RNA–protein pairs in 21.6 ms