RNA–Protein interactions for RNA: ENST00000506042.5

SQSTM1-210, Transcript of sequestosome 1, humanhuman

TSL 2

Gene SQSTM1, Length 921 nt, Biotype processed transcript, Subcellular localisation Cytoplasm, Nucleus, Ribosome .

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RNA Protein Prediction (catRAPID) Interaction (ENCODE eCLIP)
Transcript Symbol Ensembl Transcript ID Gene UniProt Accession Length Protein Status Prediction Score Prediction z-Score p-Value Fold Change
SQSTM1-210ENST00000506042 M1APQ8TC57 530 aa19.9■□□□□ 0.78
SQSTM1-210ENST00000506042 ZNF480Q8WV37 535 aa19.9■□□□□ 0.78
SQSTM1-210ENST00000506042 CYTH2Q99418 400 aa19.9■□□□□ 0.78
SQSTM1-210ENST00000506042 CELSR2Q9HCU4 2923 aa19.89■□□□□ 0.78
SQSTM1-210ENST00000506042 NBPF19A0A087WUL8 3843 aa19.89■□□□□ 0.78
SQSTM1-210ENST00000506042 KCNE1BA0A087WTH5 132 aa19.89■□□□□ 0.77
SQSTM1-210ENST00000506042 FAM227AF5H4B4 570 aa19.89■□□□□ 0.77
SQSTM1-210ENST00000506042 FFAR3O14843 346 aa19.89■□□□□ 0.77
SQSTM1-210ENST00000506042 HAT1O14929 419 aa19.89■□□□□ 0.77
SQSTM1-210ENST00000506042 GPR42O15529 346 aa19.89■□□□□ 0.77
SQSTM1-210ENST00000506042 FOXS1O43638 330 aa19.89■□□□□ 0.77
SQSTM1-210ENST00000506042 NRP2O60462 931 aa19.89■□□□□ 0.77
SQSTM1-210ENST00000506042 SEC24DO94855 1032 aaPredicted RBP19.89■□□□□ 0.77
SQSTM1-210ENST00000506042 ZSCAN5DPP0CG00 497 aa19.89■□□□□ 0.77
SQSTM1-210ENST00000506042 XCR1P46094 333 aa19.89■□□□□ 0.77
SQSTM1-210ENST00000506042 OC90Q02509 493 aaPredicted RBP19.89■□□□□ 0.77
SQSTM1-210ENST00000506042 DHX34Q14147 1143 aaKnown RBP19.89■□□□□ 0.77
SQSTM1-210ENST00000506042 CRYBG3Q68DQ2 2970 aa19.89■□□□□ 0.77
SQSTM1-210ENST00000506042 OR51Q1Q8NH59 317 aa19.89■□□□□ 0.77
SQSTM1-210ENST00000506042 VN1R1Q9GZP7 353 aa19.89■□□□□ 0.77
SQSTM1-210ENST00000506042 XAB2Q9HCS7 855 aaKnown RBP19.89■□□□□ 0.77
SQSTM1-210ENST00000506042 KRT87PA6NCN2 255 aa19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 GOLGA8KD6RF30 607 aa19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 GOLGA8TH3BQL2 631 aa19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 H7BY64 318 aa19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 HIST1H2AGP0C0S8 130 aaPredicted RBP19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 ABOP16442 354 aa19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 HIST1H2ADP20671 130 aa19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 JAK1P23458 1154 aa19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 MEF2AQ02078 507 aaPredicted RBP19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 UBE2R2Q712K3 238 aaPredicted RBP19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 PCGF5Q86SE9 256 aa19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 PRUNE1Q86TP1 453 aa19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 C17orf64Q86WR6 236 aa19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 LGI4Q8N135 537 aa19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 PRELID2Q8N945 189 aa19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 OR9A4Q8NGU2 314 aa19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 ASB11Q8WXH4 323 aa19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 HIST1H2AHQ96KK5 128 aa19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 PRAP1Q96NZ9 151 aa19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 OR1F2PQ96R84 312 aa19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 HIST1H2AJQ99878 128 aa19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 H2AFJQ9BTM1 129 aa19.88■□□□□ 0.77
SQSTM1-210ENST00000506042 IGKV1-8A0A0C4DH67 115 aa19.87■□□□□ 0.77
SQSTM1-210ENST00000506042 FAM237BA0A1B0GVD1 139 aa19.87■□□□□ 0.77
SQSTM1-210ENST00000506042 SDR42E2A6NKP2 422 aa19.87■□□□□ 0.77
SQSTM1-210ENST00000506042 FGGP02679 453 aa19.87■□□□□ 0.77
SQSTM1-210ENST00000506042 MLNP12872 115 aa19.87■□□□□ 0.77
SQSTM1-210ENST00000506042 SKIV2L2P42285 1042 aaKnown RBP19.87■□□□□ 0.77
SQSTM1-210ENST00000506042 CLCN7P51798 805 aa19.87■□□□□ 0.77
SQSTM1-210ENST00000506042 HERC3Q15034 1050 aa19.87■□□□□ 0.77
SQSTM1-210ENST00000506042 SYT16Q17RD7 645 aa19.87■□□□□ 0.77
SQSTM1-210ENST00000506042 CES3Q6UWW8 571 aa19.87■□□□□ 0.77
SQSTM1-210ENST00000506042 PPFIBP2Q8ND30 876 aa19.87■□□□□ 0.77
SQSTM1-210ENST00000506042 TMEM125Q96AQ2 219 aa19.87■□□□□ 0.77
SQSTM1-210ENST00000506042 ZNF669Q96BR6 464 aaPredicted RBP19.87■□□□□ 0.77
SQSTM1-210ENST00000506042 CCDC138Q96M89 665 aa19.87■□□□□ 0.77
SQSTM1-210ENST00000506042 GPR137Q96N19 417 aa19.87■□□□□ 0.77
SQSTM1-210ENST00000506042 MMP25Q9NPA2 562 aa19.87■□□□□ 0.77
SQSTM1-210ENST00000506042 DHRS7Q9Y394 339 aa19.87■□□□□ 0.77
SQSTM1-210ENST00000506042 A0A0U1RQJ8 604 aa19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 NRDCO43847 1150 aa19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 C8GP07360 202 aa19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 PRF1P14222 555 aa19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 CAPN3P20807 821 aa19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 ARNTP27540 789 aa19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 BCL6P41182 706 aa19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 MAT1AQ00266 395 aaKnown RBP19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 SP140Q13342 867 aa19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 OR1C1Q15619 314 aa19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 NSDHLQ15738 373 aa19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 H3F3CQ6NXT2 135 aa19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 BEST3Q8N1M1 668 aa19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 GHDCQ8N2G8 530 aa19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 CHTF18Q8WVB6 975 aa19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 MESP1Q9BRJ9 268 aa19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 HAUS8Q9BT25 410 aa19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 FAM167BQ9BTA0 163 aa19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 TRIM54Q9BYV2 358 aa19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 COQ3Q9NZJ6 369 aa19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 TRMT6Q9UJA5 497 aaKnown RBP19.86■□□□□ 0.77
SQSTM1-210ENST00000506042 GFYI3L273 518 aa19.85■□□□□ 0.77
SQSTM1-210ENST00000506042 PRRG2O14669 202 aa19.85■□□□□ 0.77
SQSTM1-210ENST00000506042 CLDN14O95500 239 aa19.85■□□□□ 0.77
SQSTM1-210ENST00000506042 TSPAN12O95859 305 aa19.85■□□□□ 0.77
SQSTM1-210ENST00000506042 CELA2AP08217 269 aa19.85■□□□□ 0.77
SQSTM1-210ENST00000506042 MST1P26927 711 aa19.85■□□□□ 0.77
SQSTM1-210ENST00000506042 CDC25BP30305 580 aa19.85■□□□□ 0.77
SQSTM1-210ENST00000506042 YBX1P67809 324 aaKnown RBP19.85■□□□□ 0.77
SQSTM1-210ENST00000506042 KCNJ11Q14654 390 aa19.85■□□□□ 0.77
SQSTM1-210ENST00000506042 CENPUQ71F23 418 aa19.85■□□□□ 0.77
SQSTM1-210ENST00000506042 ANKRD37Q7Z713 158 aa19.85■□□□□ 0.77
SQSTM1-210ENST00000506042 ASPGQ86U10 573 aa19.85■□□□□ 0.77
SQSTM1-210ENST00000506042 SPPL2CQ8IUH8 684 aa19.85■□□□□ 0.77
SQSTM1-210ENST00000506042 MYO1HQ8N1T3 1032 aa19.85■□□□□ 0.77
SQSTM1-210ENST00000506042 TRIM58Q8NG06 486 aa19.85■□□□□ 0.77
SQSTM1-210ENST00000506042 MTFMTQ96DP5 389 aaKnown RBP19.85■□□□□ 0.77
SQSTM1-210ENST00000506042 LURAP1Q96LR2 239 aa19.85■□□□□ 0.77
SQSTM1-210ENST00000506042 HCN3Q9P1Z3 774 aa19.85■□□□□ 0.77
SQSTM1-210ENST00000506042 SLC22A7Q9Y694 548 aa19.85■□□□□ 0.77
Retrieved 100 of 20,778 RNA–protein pairs in 32.1 ms